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GWAS Report for Seed yield 5

Experimental Details

Number of germplasm analyzed	191
Number of loci tested	1,539
Platform name	GoldenGate assay
Platform details	Illumina

Publication for This Experiment

Identification of single nucleotide polymorphisms and haplotypes associated with yield and yield components in soybean (Glycine max) landraces across multiple environments
(Hao et al. (2011a))

Theor. Appl. Genet. (2012) 124:447-458
10.1007/s00122-011-1719-0

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001622
TO	TO:0000396

Other traits reported in this paper

• Pod number 4
• Seeds per plant 4
• Seed weight 8

Comments

Statistical data was not included as measurements were taken over 5 different environments. Refer to the paper for details on the p-value for each of the tested environements.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	Chromosome	Linkage Group
Seed yield 5-g1	ss107913538	Gm03	N

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