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GWAS Report for Pod number 4

Experimental Details

Number of germplasm analyzed	191
Number of loci tested	1,539
Platform name	GoldenGate assay
Platform details	Illumina

Publication for This Experiment

Identification of single nucleotide polymorphisms and haplotypes associated with yield and yield components in soybean (Glycine max) landraces across multiple environments
(Hao et al. (2011a))

Theor. Appl. Genet. (2012) 124:447-458
10.1007/s00122-011-1719-0

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001702
PO	PO:0009001
TO	TO:0000894

Other traits reported in this paper

• Seeds per plant 4
• Seed weight 8
• Seed yield 5

Comments

Statistical data was not included as measurements were taken over 5 different environments. Refer to the paper for details on the p-value for each of the tested environements.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	Chromosome	Linkage Group
Pod number 4-g1	ss107920423	Gm01	D1a
Pod number 4-g2	ss107913655	Gm01	D1a
Pod number 4-g3	ss107915031	Gm10	O
Pod number 4-g4	ss107917367	Gm11	B1
Pod number 4-g5	ss107917368	Gm11	B1
Pod number 4-g6	ss107920090	Gm13	F
Pod number 4-g7	ss107920043	Gm02	D1b
This GWAS QTL was originally reported on Gm14. The SNP associated with this QTL is located on Gm02.
Pod number 4-g8	ss107913323	Gm18	G

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