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GWAS Report for Seed yield 4

Experimental Details

Number of germplasm analyzed	113
Number of loci tested	85

Publication for This Experiment

Association mapping of yield-related traits and SSR markers in wild soybean (Glycine soja Sieb. and Zucc.)
(Hu et al. 2014a)

Breed Sci. 2014, 63(5):441-449
10.1270/jsbbs.63.441

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001622
TO	TO:0000396

Other traits reported in this paper

• First flower 3
• R8 full maturity 3
• Seed weight 4
• Pod number 3

Comments

QTL were detected in multiple environments - the reported QTL was present in at least one year/environment.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	p-value	Chromosome	Linkage Group
Seed yield 4-g1	Satt641	0.000354813	Gm03	N
Seed yield 4-g2	Satt521	0.009120108	Gm03	N
Seed yield 4-g3	Satt316	0.000794328	Gm06	C2
Seed yield 4-g4	Sat_330	0.00060256	Gm07	M
Seed yield 4-g5	sct_010	3.09E-06	Gm19	L
Seed yield 4-g6	GMES4376	0.004265795	Gm19	L

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