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GWAS Report for First flower 3

Experimental Details

Number of germplasm analyzed	113
Number of loci tested	85

Publication for This Experiment

Association mapping of yield-related traits and SSR markers in wild soybean (Glycine soja Sieb. and Zucc.)
(Hu et al. 2014a)

Breed Sci. 2014, 63(5):441-449
10.1270/jsbbs.63.441

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001640
PO	PO:0009046
TO	TO:0000369

Other traits reported in this paper

• R8 full maturity 3
• Seed weight 4
• Pod number 3
• Seed yield 4

Comments

QTL were detected in multiple environments - the reported QTL was present in at least one year/environment.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	p-value	Chromosome	Linkage Group
First flower 3-g1	Satt408	0.00851138	Gm01	D1a
First flower 3-g2	Satt521	0.001202264	Gm03	N
First flower 3-g3	Satt322	0.005888437	Gm06	C2
First flower 3-g4	Satt636	0.008709636	Gm07	M
First flower 3-g5	Satt150	0.01	Gm07	M
First flower 3-g6	Satt417	0.009120108	Gm09	K
First flower 3-g7	Satt405	0.008317638	Gm16	J
First flower 3-g8	Satt285	0.009120108	Gm16	J
First flower 3-g9	sctt010	0.001	Gm18	G
First flower 3-g10	Satt564	0.000912011	Gm18	G
First flower 3-g11	Satt614	0.008317638	Gm20	I

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