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GWAS Report for Seed weight 9

Experimental Details

Number of germplasm analyzed	83
Number of loci tested	67594
Platform name	SoySNP50K
Platform details	SoySNP50K microarray

Publication for This Experiment

Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines
(Copley et al. 2018a)

BMC Genomics 2018, 19:167
10.1186/s12864-018-4558-4

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001629
PO	PO:0009010
TO	TO:0000181

Other traits reported in this paper

• R8 full maturity 10
• First flower 8
• Reproductive stage length 4
• Seed yield 6

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	Chromosome	Linkage Group
Seed weight 9-g1.1	ss715589103	Gm04	C1
Seed weight 9-g1.2	Gm04:8191897	Gm04	C1
Seed weight 9-g2	Gm04:37659105	Gm04	C1
Seed weight 9-g3.1	ss715593787	Gm06	C2
Seed weight 9-g3.2	ss715593791	Gm06	C2
Seed weight 9-g4	ss715603152	Gm09	K
Seed weight 9-g5.1	Gm19:40130037	Gm19	L
Seed weight 9-g5.2	Gm19:43116996	Gm19	L

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Click Here to View Full List of GWAS QTL