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GWAS Report for Reproductive stage length 4

Experimental Details

Number of germplasm analyzed	83
Number of loci tested	67594
Platform name	SoySNP50K
Platform details	SoySNP50K microarray

Publication for This Experiment

Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines
(Copley et al. 2018a)

BMC Genomics 2018, 19:167
10.1186/s12864-018-4558-4

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001824
PO	PO:0007016
TO	TO:0000366

Other traits reported in this paper

• R8 full maturity 10
• First flower 8
• Seed weight 9
• Seed yield 6

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	Chromosome	Linkage Group
Reproductive stage length 4-g1		Gm03:38579331	Gm03	N
Reproductive stage length 4-g2.1	Gm10:40769008	ss715607007	Gm10	O
Reproductive stage length 4-g2.2	Gm10:40793025	ss715607011	Gm10	O
Reproductive stage length 4-g3		Gm13:29387862	Gm13	F
Reproductive stage length 4-g4	Gm14:31326567	ss715618151	Gm14	B2

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Click Here to View Full List of GWAS QTL