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Integrating Genetics and Genomics to Advance Soybean Research

Seed weight 54-3
Parent 1:Fiskeby III
Parent 2:Mandarin
Heritability:0.78
Num loci tested:501
Intervals associated:BARC-031099-06997
Interval length:0.29
Interval LOD score:6
Interval P value:0.02
Trait name:Seed weight

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000181
Plant OntologyPO:0009010

     
Other related QTL's
Seed weight 54-1
Seed weight 54-2

Other names for the QTL
SeedwtQTL6.1

References for the QTL
Hacisalihoglu et al. 2018aQuantitative trait loci associated with soybean seed weight and composition under different phosphorus levels 
JIPB (2018) 3:232-241

     
Maps containing Seed weight 54-3
MapLGStartEnd
GmComposite2003_C2 C2112.80114.80See this QTL region in Sequence Browser

Loci positively associated with the QTL
BARC-031099-06997 Parent_1Stress tolerant
BARC-031099-06997 Parent_2Stress sensitive
BARC-031099-06997 Phenotypic_R217.7
BARC-031099-06997 P_value0.02

Population types used in identification of the QTL
RIL F5:7

Parent trait values associated with the QTL
ParentTrait
Fiskeby IIIStress tolerant
MandarinStress sensitive

Other QTLs studied
Pod weight
Seed volume
Seed protein

Loci associated with the QTL
BARC-031099-06997

Methods used to identify the QTL
ANOVA
CIM

Comments about the QTL
QTL associated markers were approximately placed on the SoyBase Composite2003 genetic map by identifying the nearest genetically mapped markers on each side of the given marker on the Wm82.a2 genome, and calculating the markerŐs position on the genetic map based off of the relative distance to each of the flanking markers.






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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