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Seed genistein 5-1
Parent 1:Magellan
Parent 2:PI437654
Heritability:0.9
Num loci tested:451
Interval length:3.7
Trait name:Seed genistein content

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000290
Plant OntologyPO:0009010

     
Other related QTL's
Seed genistein 5-2
Seed genistein 5-3
Seed genistein 5-4

Other names for the QTL
qGEN5

References for the QTL
Gutierrez-Gonzalez et al. 2011Major locus and other novel additive and epistatic loci involved in modulation of isoflavone concentration in soybean seeds 
Theor. Appl. Genet. 2011, 123(8):1375-1385

     
Maps containing Seed genistein 5-1
This QTL could not be placed on the Composite genetic map. See comments below for more information.

Loci positively associated with the QTL
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
BARC-041257-07953Phenotypic_R236
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
BARC-041257-07953P_value0.001
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
BARC-041257-07953Favorable_allele_sourcePI437654
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
BARC-041257-07953Additive_effect120

Population types used in identification of the QTL
F7 RIL

Parent trait values associated with the QTL
ParentTrait
MagellanLow isoflavone level
PI437654High isoflavone level

Other QTLs studied
Daidzein content
Glycitein content
Total isoflavone content

Loci associated with the QTL
BARC-041257-07953
BARC-060051-16321

Methods used to identify the QTL
BeadStudio 3.0
Carthagene 1.0
QTLNetwork 2.0
CIM

Comments about the QTL
Neither marker (BARC-041257-07953, BARC-060051-16321) reported as flanking this QTL is on the SoyBase Composite genetic map. Thus the QTL does not appear in the map display. See the publication for additional details
The trait measured was the content of the isoflavone genistein in seeds. Publication used a minimum LOD score of 9.0 for determining QTL, but did not provide a LOD score for each QTL; see publication for additional details






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