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SCN 6-1
Parent 1:Evans
Parent 2:PI88788
Num loci tested:287
Percent Variation Explained:36.3
Trait name:Reaction to Heterodera glycines

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000384
Gene OntologyGO:0009624

     
References for the QTL
Concibido et al. 1997Genome mapping of soybean cyst nematode resistance genes in Peking, PI90763, and PI88788 using DNA markers 
Crop Sci. 1997, 37(1):258-264

     
Genes associated with the QTL
Rhg1

Maps containing SCN 6-1
MapLGStartEnd
GmComposite2003_G G0.802.80See this QTL region in Sequence Browser

Loci positively associated with the QTL
C006_1Parent_2Effective
C006_1P_value0.000100

Population types used in identification of the QTL
F2:3

Parent trait values associated with the QTL
ParentTrait
EvansSusceptible
PI88788Resistant to race 3

Loci associated with the QTL
C006_1

Gene associated with the QTL
Rhg1

Methods used to identify the QTL
ANOVA

Comments about the QTL
% variation depends upon race; highest % given here
A Candidate_gene maps within 10 cM of the QTL. A Putative_candidate_gene is linked to the QTL, but more than 10 cM from it.
The trait is resistance to Soybean Cyst Nematode ( SCN ) disease which is caused by the nematode Heterodera glycines. Study done by analysis of variance at locus; for purposes of display this was converted to an interval around that locus.






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