SCN 51-2

Parent 1:	LD00-2817P
Parent 2:	LDX01-1-65
Intervals associated:	ss107928610-ss107921637
Interval length:	6.9
Trait name:	Reaction to Heterodera glycines

Controlled vocabulary terms associated with the QTL

Source	Accession Number
Plant Trait Ontology	TO:0000384
Gene Ontology	GO:0009624

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References for the QTL

Valdes-Lopez et al. 2011a

Identification of Quantitative Trait Loci Controlling Gene Expression during the Innate Immunity Response of Soybean
Plant Physiology (2011) 157:1975-1986

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Maps containing SCN 51-2

Map	LG	Start	End
GmComposite2003_C1	C1	73.70	80.60	See this QTL region in Sequence Browser

Loci positively associated with the QTL

ss107928610

Parent_1

SCN resistant

ss107928610

Parent_2

SCN suceptible

Population types used in identification of the QTL

F3:4

Parent trait values associated with the QTL

Parent	Trait
LD00-2817P	SCN resistant
LDX01-1-65	SCN suceptible

Other QTLs studied

SCN 51-1

SCN 51-3

SCN 51-4

Loci associated with the QTL

ss107928610

ss107921637

Methods used to identify the QTL

MapQTL 4.0

Comments about the QTL

QTL associated markers were approximately placed on the SoyBase Composite2003 genetic map by BLASTing the markerÕs sequence against the Wm82.a2 genome, identifying the nearest genetically mapped markers on each side of the BLAST hit, and interpolating the markerÕs position on the genetic map to a similar relative position. QTL was evaluated for soyben cyst nematode resistance.

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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