SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

SCN 39-10
Parent 1:PI437654
Parent 2:Essex
Heritability:0.816
Num loci tested:273
Interval length:6.4
Trait name:Reaction to Heterodera glycines

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000384
Gene OntologyGO:0009624

     
Other related QTL's
SCN 39-1
SCN 39-2
SCN 39-3
SCN 39-4
SCN 39-5
SCN 39-6
SCN 39-7
SCN 39-8
SCN 39-9
SCN 39-11
SCN 39-12

Other names for the QTL
S5-3

References for the QTL
Wu et al. 2009QTL, additive and epistatic effects for SCN resistance in PI 437654 
Theor. Appl. Genet. 2009, 118(6):1093-1105

     
Maps containing SCN 39-10
MapLGStartEnd
GmComposite2003_C1 C138.2344.63See this QTL region in Sequence Browser

Loci positively associated with the QTL
Sat_140Parent_11.4 FI
Sat_140Parent_2141.5 FI
Sat_140P_value0
Sat_140Additive_effect4.33

Population types used in identification of the QTL
F7:9 RIL

Parent trait values associated with the QTL
ParentTrait
PI437654SCN resistant
EssexSCN susceptible

Loci associated with the QTL
Sat_140

Methods used to identify the QTL
GeneMapper 3.7
JoinMap 3.0
QTLNetwork
CIM

Comments about the QTL
Parent_1 is PI437654, Parent_2 is Essex
The trait is resistance to Soybean Cyst Nematode ( SCN ) disease which is caused by the nematode Heterodera glycines. QTL is associated with resistance to SCN Race 3
Publication used Female Index (FI) to quantify SCN resistance, where FI=(no. of cysts on individual/average no. of cysts on cv. Hutcheson)x100
One marker (EaacMctc178) reported as flanking this QTL is not on the SoyBase Composite genetic map. The QTL position shown is an interval around the marker that is present on the SoyBase map. See the publication for additional details






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo