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Integrating Genetics and Genomics to Advance Soybean Research

Locus Type:  SSR


Maps Containing Satt649
Map NamePosition
GmComposite2003_F 5.36
GmConsensus40_F 35.554


Genomic Sequence Information for Satt649
ChromosomeStart PosEnd PosMotifDerived FromPolymorphic*Assembly Version
Gm13 1295332112953374(ATA)18Wm82yesGlyma 1.0
Gm13 12256651225891(ATA)18Wm82yesGlyma 2.0

*Polymorphic in the following germplasms:
Williams 82,  Noir 1,  Minsoy,  Archer,  Evans,  Peking,  Essex, and   PI 468916


QTLs Associated with Satt649
Leaflet chlorophyll 1-7
Rag 3-2
Rag 4-2
Seed length to thickness ratio 1-3
Seed length to width ratio 1-8
Seed width to thickness ratio 1-4


Amplification Info for Satt649
More than one entry indicates that this SSR was independently identified by different labs sometimes using separate methodology resulting in unique primer pairs.
NameSatt649
Primer1TTACTGGCCGTGTTTACCCGTGTAA
Primer2GCGGACGTTATAAGATTTTTTTATCATG
Motif(ATA)18
    
NameBARCSOYSSR_13_0572
Primer1TTACTGGCCGTGTTTACCCGTGTAA
Primer2GCGGACGTTATAAGATTTTTTTATCATG
Motif(ATA)18
    


Information Providers
Song, Qijian and Cregan, Perry

References for Satt649
Song et al. 2004 A new integrated genetic linkage map of the soybean Theor Appl Genet 2004 109:122-128






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