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Integrating Genetics and Genomics to Advance Soybean Research

Locus Type:  SSR


Maps Containing Satt580
Map NamePosition
GmComposite2003_D1a 62.36
GmConsensus40_D1a 36.581


Genomic Sequence Information for Satt580
ChromosomeStart PosEnd PosMotifDerived FromPolymorphic*Assembly Version
Gm01 4436768844367726(ATA)13Wm82yesGlyma 1.0
Gm01 4523321445233327(ATA)13Wm82yesGlyma 2.0

*Polymorphic in the following germplasms:
Williams 82,  Noir 1,  Minsoy,  Archer,  Evans,  Peking,  Essex, and   PI 468916


QTLs Associated with Satt580
Leaflet chlorophyll 1-6
Leaflet shape 6-3
Leaflet shape 9-5
Leaflet width 6-2
Leaflet width 7-2
Root morphology 1-1
Seed Cys 3-4
Seed Met 3-4
Seed oil 39-5


Amplification Info for Satt580
More than one entry indicates that this SSR was independently identified by different labs sometimes using separate methodology resulting in unique primer pairs.
NameSatt580
Primer1CCTGCCATCCTAGATTAAAA
Primer2GGGAATCAAGTCCACTGCCACTC
Motif(ATA)13
    
NameBARCSOYSSR_01_1167
Primer1CCTGCCATCCTAGATTAAAA
Primer2GGGAATCAAGTCCACTGCCACTC
Motif(ATA)13
    


Information Providers
Song, Qijian and Cregan, Perry

References for Satt580
Cregan et al. 1999A An integrated genetic linkage map of the soybean genome Crop Sci. 1999, 39(5):1464-1490






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