SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Locus Type:  SSR


Maps Containing Satt496
Map NamePosition
GmComposite2003_I 36.4
GmConsensus40_I 31.514


Genomic Sequence Information for Satt496
ChromosomeStart PosEnd PosMotifDerived FromPolymorphic*Assembly Version
Gm20 2650299726503035(ATT)13Wm82yesGlyma 1.0
Gm20 2766450427664834(ATT)13Wm82yesGlyma 2.0

*Polymorphic in the following germplasms:
Williams 82,  Noir 1,  Minsoy,  Archer,  Evans,  Peking,  Essex, and   PI 468916


QTLs Associated with Satt496
cqR8 Full maturity-001
cqSeed oil-004
cqSeed protein-003
cqSeed weight-003
cqSeed yield-001
First flower 20-3
Pod maturity 24-5
SDS disease index 21-3
Seed coat cracking 3-2
Seed oil 15-1
Seed oil 32-3
Seed protein 15-1
Seed protein 31-1
Seed yield 14-1


Amplification Info for Satt496
More than one entry indicates that this SSR was independently identified by different labs sometimes using separate methodology resulting in unique primer pairs.
NameSatt496
Primer1GCGATCCCTTTATGTTGGTATTACATT
Primer2GCGGCACACAAGTAGTTGTGAAACTAA
Motif(ATT)13
    
NameBARCSOYSSR_20_0587
Primer1GCGATCCCTTTATGTTGGTATTACATT
Primer2GCGGCACACAAGTAGTTGTGAAACTAA
Motif(ATT)13
    
NameSSR0272
Primer1TAAACATATTAAAATGTATCATAATTTGCTATTTCT
Primer2CTAATTTCTTTTTAATTTATCCCTTTATGTTG
Motif(ATT)13
    

References for Satt496
Shoemaker et al. 2008 Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps Genome 2008 51:294-302
Cregan et al. 1999A An integrated genetic linkage map of the soybean genome Crop Sci. 1999, 39(5):1464-1490






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo