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Integrating Genetics and Genomics to Advance Soybean Research

Locus Type:  SSR


Maps Containing Satt339
Map NamePosition
GmComposite2003_N 75.91
GmConsensus40_N 60.168


Genomic Sequence Information for Satt339
ChromosomeStart PosEnd PosMotifDerived FromPolymorphic*Assembly Version
Gm03 3993452939934609(ATA)27Wm82yesGlyma 1.0
Gm03 3791742037917650(ATA)27Wm82yesGlyma 2.0

*Polymorphic in the following germplasms:
Williams 82,  Noir 1,  Minsoy,  Archer,  Evans,  Peking,  Essex, and   PI 468916


QTLs Associated with Satt339
Drought tolerance 6-1
Plant height 17-7
Root morphology 1-2
Salt tolerance 4-1
Salt tolerance 4-2
Seed phytate 2-1
Seed protein 21-9
Seed thickness 1-2
Seed yield 15-13
Shoot weight, dry 5-4


Amplification Info for Satt339
More than one entry indicates that this SSR was independently identified by different labs sometimes using separate methodology resulting in unique primer pairs.
NameSatt339
Primer1TAATATGCTTTAAGTGGTGTGGTTATG
Primer2GTTAAGCAGTTCCTCTCATCACG
Motif(ATA)27
    
NameBARCSOYSSR_03_1307
Primer1TAATATGCTTTAAGTGGTGTGGTTATG
Primer2GTTAAGCAGTTCCTCTCATCACG
Motif(ATA)27
    


Information Providers
Song, Qijian and Cregan, Perry

References for Satt339
Cregan et al. 1999A An integrated genetic linkage map of the soybean genome Crop Sci. 1999, 39(5):1464-1490






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