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Integrating Genetics and Genomics to Advance Soybean Research

Locus Type:  SSR


Maps Containing Satt253
Map NamePosition
GmComposite2003_H 67.16
GmConsensus40_H 63.3


Genomic Sequence Information for Satt253
ChromosomeStart PosEnd PosMotifDerived FromPolymorphic*Assembly Version
Gm12 1864412818644178(TAT)17Wm82yesGlyma 1.0
Gm12 2588829225888437(TAT)17Wm82yesGlyma 2.0

*Polymorphic in the following germplasms:
Williams 82,  Noir 1,  Minsoy,  Archer,  Evans,  Peking,  Essex, and   PI 468916


QTLs Associated with Satt253
Pod borer 1-1
Pod borer 1-2
Seed genistein 11-5
Seed glycitein 13-9
Seed isoflavone 11-8
Seed total isoflavone 9-4
Seed total isoflavone 9-5
Seed weight 35-4
Shoot weight, dry 3-2


Amplification Info for Satt253
More than one entry indicates that this SSR was independently identified by different labs sometimes using separate methodology resulting in unique primer pairs.
NameSatt253
Primer1GCGCCCTAATAAAGATAAGACAAG
Primer2GCGTGGCCTTTTCCCATTTA
Motif(TAT)17
    
NameBARCSOYSSR_12_0796
Primer1GCGCCCTAATAAAGATAAGACAAG
Primer2GCGTGGCCTTTTCCCATTTA
Motif(TAT)17
    


Information Providers
Song, Qijian and Cregan, Perry

References for Satt253
Cregan et al. 1999A An integrated genetic linkage map of the soybean genome Crop Sci. 1999, 39(5):1464-1490






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