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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28140 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9833029-9834390 REVERSE L | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF10063 | PFAM | Uncharacterized integral membrane protein (DUF2301) | JGI | ISS | |
| UniRef100_I1NJF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NJF6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FZ88 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F3H9.20 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FZ88_ARATH | SoyBase | E_val: 6.00E-110 | ISS |
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Glyma20g39400 not represented in the dataset |
Glyma20g39400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g249800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g39400.2 sequence type=transcript gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTCATTTTTCGGCAAAAACGTTTACTTTAAACTAAAATATCTGGTGTACCAAAAAAACTAAAATATCTGGACATAATAGTAGAAGTGCATTATGACCACGAGTCCAATTTGAAGAAAAATAAAGTTATTATTAAAACTGAAATATCCAAAAGTCAGAAGATGGCATTGCGAGGATTGAGTGCGGTGGCGGTGACGGCGTCAATACGCCCTCCCGGTCCTCGATTCAGAGTAGACAGCGGCACATCAAGGATTCCCTCTTCCGGATGCAGAATCTCGGTGCGGTGTAAAGCTGTCGGAGAAAGCCGACAAGGTTCCTTGGAGGAAACCGTTGTTTATGAGGGTATTTATGGCCCCTGGACCATTGACGACTCCGATGTTCGAGAGGTGTTGTTTATAATTTCATTTGATTTTGAAAAATGTTTCTTAGACAACCCTTGAGAGAGAAAGGAAGAGATGAGAAATGAGTGATTGATGATGTAGCGTGATAAGAAGAGAGAAAAGATAATTGTTGGTTGAGTGTAAGAAACTTTTGTACGTGGATTCATCATCAATTAGTTAATTATGCTATGCTATGGCAGGTAATTTTGTACAGATCAGGATTGGTAACAGCTGCTGCATCATTTGTGGTCGCTGGTTCTGCTGCCTTTTTTCCCGATACTCTGAAGCAGAATGTTGATTTATTGTATGTCCTTGGGTCTGGTGGGTTGGGTTTATCGTTGCTCTTGATTCACATATATGTGTCTGAGATCAAGCGCGCCCTACAAGCACTATGGGGGCTTGGTGTTGTTGGATCGGCCACAACCTACTTTTGCCTTGCTCAACCAGCTAATAAGAATCTAATACAATATGTTGTTGACAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCCTTGACAGGACTTGTCTTCAAGGAAGGACTCTGCTATGCCAAGCTTGAAGCTGGACTTCTCACCTTTGTTATTCCCATACTTCTTCTTGGCCATCTGACTGGTTTGATGGATGATGGAGTTAAGCTTACTTTACTTGCTTCGTGGATGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATTAAGATGGATTGCTTTAACTGGATGTGGGAAAATTTTGAAAGGACCATCTCACGCTCTGTGAGCAATTATCCCATGTAAAAGGAAATATTTTCAGCCCCTCCCCTAGAAATTAAAGATGATACCACAGTTACTAAACCACTTTCCCATGTCTTCCTTGATCTCTGCAAAAGTTACACTACATGGTCTATACTATACACATATATTTAGGGTCGTTGTCCTGTGCAAATGATAATGCATGCTTGACTCAGAACCTGCAGAATGACAATTTAGTGAAGGTTGGTTTGTGTAGAAGTGTTTCATTTAGTTCGTTTATTAATTAAACAAGTATTATATTATCAGTACATGAACTAAACAAAAAGTCTCTATGATAATTAATAATTATGCATGCTTGCAGTCCCGAACGAATCCAGATATCTATCAAATGGGGGCTAAATATTTTTTCTTTTTTCTTTT >Glyma20g39400.3 sequence type=transcript gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTCATTTTTCGGCAAAAACGTTTACTTTAAACTAAAATATCTGGTGTACCAAAAAAACTAAAATATCTGGACATAATAGTAGAAGTGCATTATGACCACGAGTCCAATTTGAAGAAAAATAAAGTTATTATTAAAACTGAAATATCCAAAAGTCAGAAGATGGCATTGCGAGGATTGAGTGCGGTGGCGGTGACGGCGTCAATACGCCCTCCCGGTCCTCGATTCAGAGTAGACAGCGGCACATCAAGGATTCCCTCTTCCGGATGCAGAATCTCGGTGCGGTGTAAAGCTGTCGGAGAAAGCCGACAAGGTTCCTTGGAGGAAACCGTTGTTTATGAGGGTATTTATGGCCCCTGGACCATTGACGACTCCGATGTTCGAGAGGTAATTTTGTACAGATCAGGATTGGTAACAGCTGCTGCATCATTTGTGGTCGCTGGTTCTGCTGCCTTTTTTCCCGATACTCTGAAGCAGAATGTTGATTTATTGTATGTCCTTGGGTCTGGTGGGTTGGGTTTATCGTTGCTCTTGATTCACATATATGTGTCTGAGATCAAGCGCGCCCTACAAGCACTATGGGGGCTTGGTGTTGTTGGATCGGCCACAACCTACTTTTGCCTTGCTCAACCAGCTAATAAGAATCTAATACAATATGTTGTTGACAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCCTTGACAGGACTTGTCTTCAAGGAAGGACTCTGCTATGCCAAGCTTGAAGCTGGACTTCTCACCTTTGTTATTCCCATACTTCTTCTTGGCCATCTGACTGGTTTGATGGATGATGGAGTTAAGCTTACTTTACTTGCTTCGTGGATGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGGTATATTTACTTTTACTTTTCTCTTTTTCTGTTCATACAATTAGTTTATATCTTCATTGATCTTGGGACTCATGCTTAACATCAAACTCAAGGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATTAAGATGGATTGCTTTAACTGGATGTGGGAAAATTTTGAAAGGACCATCTCACGCTCTGTGAGCAATTATCCCATGTAAAAGGAAATATTTTCAGCCCCTCCCCTAGAAATTAAAGATGATACCACAGTTACTAAACCACTTTCCCATGTCTTCCTTGATCTCTGCAAAAGTTACACTACATGGTCTATACTATACACATATATTTAGGGTCGTTGTCCTGTGCAAATGATAATGCATGCTTGACTCAGAACCTGCAGAATGACAATTTAGTGAAGGTTGGTTTGTGTAGAAGTGTTTCATTTAGTTCGTTTATTAATTAAACAAGTATTATATTATCAGTACATGAACTAAACAAAAAGTCTCTATGATAATTAATAATTATGCATGCTTGCAGTCCCGAACGAATCCAGATATCTATCAAATGGGGGCTAAATATTTTTTCTTTTTTCTTTT
>Glyma20g39400.1 sequence type=CDS gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGCGAGGATTGAGTGCGGTGGCGGTGACGGCGTCAATACGCCCTCCCGGTCCTCGATTCAGAGTAGACAGCGGCACATCAAGGATTCCCTCTTCCGGATGCAGAATCTCGGTGCGGTGTAAAGCTGTCGGAGAAAGCCGACAAGGTTCCTTGGAGGAAACCGTTGTTTATGAGGGTATTTATGGCCCCTGGACCATTGACGACTCCGATGTTCGAGAGGTAATTTTGTACAGATCAGGATTGGTAACAGCTGCTGCATCATTTGTGGTCGCTGGTTCTGCTGCCTTTTTTCCCGATACTCTGAAGCAGAATGTTGATTTATTGTATGTCCTTGGGTCTGGTGGGTTGGGTTTATCGTTGCTCTTGATTCACATATATGTGTCTGAGATCAAGCGCGCCCTACAAGCACTATGGGGGCTTGGTGTTGTTGGATCGGCCACAACCTACTTTTGCCTTGCTCAACCAGCTAATAAGAATCTAATACAATATGTTGTTGACAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCCTTGACAGGACTTGTCTTCAAGGAAGGACTCTGCTATGCCAAGCTTGAAGCTGGACTTCTCACCTTTGTTATTCCCATACTTCTTCTTGGCCATCTGACTGGTTTGATGGATGATGGAGTTAAGCTTACTTTACTTGCTTCGTGGATGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATTAA >Glyma20g39400.2 sequence type=CDS gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTATGGCAGGTAATTTTGTACAGATCAGGATTGGTAACAGCTGCTGCATCATTTGTGGTCGCTGGTTCTGCTGCCTTTTTTCCCGATACTCTGAAGCAGAATGTTGATTTATTGTATGTCCTTGGGTCTGGTGGGTTGGGTTTATCGTTGCTCTTGATTCACATATATGTGTCTGAGATCAAGCGCGCCCTACAAGCACTATGGGGGCTTGGTGTTGTTGGATCGGCCACAACCTACTTTTGCCTTGCTCAACCAGCTAATAAGAATCTAATACAATATGTTGTTGACAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCCTTGACAGGACTTGTCTTCAAGGAAGGACTCTGCTATGCCAAGCTTGAAGCTGGACTTCTCACCTTTGTTATTCCCATACTTCTTCTTGGCCATCTGACTGGTTTGATGGATGATGGAGTTAAGCTTACTTTACTTGCTTCGTGGATGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGGATGACATCGGTGACAAGTCTGTTTTCATGTTCAATTCTCTTCCTGGTGACGAGAGGAAAGCCTTGCTTGAGAAATTAGAACAGCAAAAAATTCAGAATTAA >Glyma20g39400.3 sequence type=CDS gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGCGAGGATTGAGTGCGGTGGCGGTGACGGCGTCAATACGCCCTCCCGGTCCTCGATTCAGAGTAGACAGCGGCACATCAAGGATTCCCTCTTCCGGATGCAGAATCTCGGTGCGGTGTAAAGCTGTCGGAGAAAGCCGACAAGGTTCCTTGGAGGAAACCGTTGTTTATGAGGGTATTTATGGCCCCTGGACCATTGACGACTCCGATGTTCGAGAGGTAATTTTGTACAGATCAGGATTGGTAACAGCTGCTGCATCATTTGTGGTCGCTGGTTCTGCTGCCTTTTTTCCCGATACTCTGAAGCAGAATGTTGATTTATTGTATGTCCTTGGGTCTGGTGGGTTGGGTTTATCGTTGCTCTTGATTCACATATATGTGTCTGAGATCAAGCGCGCCCTACAAGCACTATGGGGGCTTGGTGTTGTTGGATCGGCCACAACCTACTTTTGCCTTGCTCAACCAGCTAATAAGAATCTAATACAATATGTTGTTGACAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCCTTGACAGGACTTGTCTTCAAGGAAGGACTCTGCTATGCCAAGCTTGAAGCTGGACTTCTCACCTTTGTTATTCCCATACTTCTTCTTGGCCATCTGACTGGTTTGATGGATGATGGAGTTAAGCTTACTTTACTTGCTTCGTGGATGACTCTTTTTGTGATATTTGCTGGAAGGAAATTCACCCAGCCCATCAAGGTATATTTACTTTTACTTTTCTCTTTTTCTGTTCATACAATTAGTTTATATCTTCATTGA
>Glyma20g39400.1 sequence type=predicted peptide gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRGLSAVAVTASIRPPGPRFRVDSGTSRIPSSGCRISVRCKAVGESRQGSLEETVVYEGIYGPWTIDDSDVREVILYRSGLVTAAASFVVAGSAAFFPDTLKQNVDLLYVLGSGGLGLSLLLIHIYVSEIKRALQALWGLGVVGSATTYFCLAQPANKNLIQYVVDNPSAVWLVGPLFAALTGLVFKEGLCYAKLEAGLLTFVIPILLLGHLTGLMDDGVKLTLLASWMTLFVIFAGRKFTQPIKDDIGDKSVFMFNSLPGDERKALLEKLEQQKIQN* >Glyma20g39400.2 sequence type=predicted peptide gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLWQVILYRSGLVTAAASFVVAGSAAFFPDTLKQNVDLLYVLGSGGLGLSLLLIHIYVSEIKRALQALWGLGVVGSATTYFCLAQPANKNLIQYVVDNPSAVWLVGPLFAALTGLVFKEGLCYAKLEAGLLTFVIPILLLGHLTGLMDDGVKLTLLASWMTLFVIFAGRKFTQPIKDDIGDKSVFMFNSLPGDERKALLEKLEQQKIQN* >Glyma20g39400.3 sequence type=predicted peptide gene model=Glyma20g39400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRGLSAVAVTASIRPPGPRFRVDSGTSRIPSSGCRISVRCKAVGESRQGSLEETVVYEGIYGPWTIDDSDVREVILYRSGLVTAAASFVVAGSAAFFPDTLKQNVDLLYVLGSGGLGLSLLLIHIYVSEIKRALQALWGLGVVGSATTYFCLAQPANKNLIQYVVDNPSAVWLVGPLFAALTGLVFKEGLCYAKLEAGLLTFVIPILLLGHLTGLMDDGVKLTLLASWMTLFVIFAGRKFTQPIKVYLLLLFSFSVHTISLYLH*
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