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Report for Sequence Feature Glyma20g39340

Feature Type:gene_model
Chromosome:Gm20
Start:46685758
stop:46688428
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g39340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13120AT Annotation by Michelle Graham. TAIR10: cyclophilin 20-2 | chr5:4162714-4164720 REVERSE LENGTH=255 SoyBaseE_val: 5.00E-112ISS
5.2.1.8EC Peptidylprolyl isomerase JGI ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0010275GO-bp Annotation by Michelle Graham. GO Biological Process: NAD(P)H dehydrogenase complex assembly SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009533GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stromal thylakoid SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
K03768KO peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] JGI ISS
KOG0880 KOG Peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF60Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN) JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_I1NJE8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Glycine max RepID=I1NJE8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1NJE8UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Glycine max RepID=I1NJE8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g39340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g39340
ParalogEvidenceComments
Glyma10g44560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g39340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g249300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g39340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g39340
>Glyma20g39340.2   sequence type=transcript   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTCTAGTTAGAGTGAATCCATGACCGTGACCATGGCGGCTGCGTTTACAATCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGAGGTGGTTCTTGTGTAATTTTGTTGGTTATTCCTTCTATTAACTTGTTGAGTTGAGAAGGGAAAGAGGGGCGGGGAAGAAGAAACTTTGGCTTTCTTAAATTTTAGTCTGACTATTCTTAAAATATGTTCTGTAACACCTTATTTTCACACTGAACCTACAAACTTTTAGCAGCCACATGTATTCTGGTAGAACTATAGTTTGAGTTGTCGTCGGGTTGGACAATTTAATACCCCATTTGAATGGTATCTTCTTAAGCCAAAGTGCAGTTTCCATGGGGAATTGGATGGCTAGAGAATTATTGGAGTCTTCTACAAGATGCATCATCAAATGTGGAATTCATTTAATTGAATTTGGAAAGAATGCACTTCTTTAAATGCTTCTCGTGATGCTTTAGCAGGCGATCAATAGAACGTGTAATAATTTAGATTAGAAATGTTAAAAATAATTTTTTTATTCTATTGAAGAATGTTAGG

>Glyma20g39340.3   sequence type=transcript   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTCTAGTTAGAGTGAATCCATGACCGTGACCATGGCGGCTGCGTTTACAAGTACAAGTGCAACACTGAGACTGGTAATTAGTTTTTGTTGAAATGAATATTATTATTAATGATAGGGTTCATTTGTGTGTGTTGTGTTGGCAGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGAGGTGGTTCTTGTGTAATTTTGTTGGTTATTCCTTCTATTAACTTGTTGAGTTGAGAAGGGAAAGAGGGGCGGGGAAGAAGAAACTTTGGCTTTCTTAAATTTTAGTCTGACTATTCTTAAAATATGTTCTGTAACACCTTATTTTCACACTGAACCTACAAACTTTTAGCAGCCACATGTATTCTGGTAGAACTATAGTTTGAGTTGTCGTCGGGTTGGACAATTTAATACCCCATTTGAATGGTATCTTCTTAAGCCAAAGTGCAGTTTCCATGGGGAATTGGATGGCTAGAGAATTATTGGAGTCTTCTACAAGATGCATCATCAAATGTGGAATTCATTTAATTGAATTTGGAAAGAATGCACTTCTTTAAATGCTTCTCGTGATGCTTTAGCAGGCGATCAATAGAACGTGTAATAATTTAGATTAGAAATGTTAAAAATAATTTTTTTATTCTATTGAAGAATGTTAGG
Coding sequences of Glyma20g39340
>Glyma20g39340.1   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGTGACCATGGCGGCTGCGTTTACAAGTACAAGTGCAACACTGAGACTGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA

>Glyma20g39340.2   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA

>Glyma20g39340.3   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATTATTATTAATGATAGGGTTCATTTGTGTGTGTTGTGTTGGCAGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA
Predicted protein sequences of Glyma20g39340
>Glyma20g39340.1   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTMAAAFTSTSATLRLSNVGESRGLQLRKCNPNPNKLKVMGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*

>Glyma20g39340.2   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*

>Glyma20g39340.3   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIIINDRVHLCVLCWQSNVGESRGLQLRKCNPNPNKLKVMGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*






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