Glyma20g39340 - SoyBase

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Report for Sequence Feature Glyma20g39340

Feature Type:	gene_model
Chromosome:	Gm20
Start:	46685758
stop:	46688428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g39340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13120	AT	Annotation by Michelle Graham. TAIR10: cyclophilin 20-2 \| chr5:4162714-4164720 REVERSE LENGTH=255	SoyBase	E_val: 5.00E-112	ISS
5.2.1.8	EC	Peptidylprolyl isomerase	JGI		ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0010275	GO-bp	Annotation by Michelle Graham. GO Biological Process: NAD(P)H dehydrogenase complex assembly	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009533	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stromal thylakoid	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
K03768	KO	peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]	JGI		ISS
KOG0880	KOG	Peptidyl-prolyl cis-trans isomerase	JGI		ISS
PTHR11071	Panther	CYCLOPHILIN	JGI		ISS
PTHR11071:SF60	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN)	JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
UniRef100_I1NJE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Glycine max RepID=I1NJE8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NJE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Glycine max RepID=I1NJE8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g39340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g39340 not represented in the dataset	Glyma20g39340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g39340

Paralog	Evidence	Comments
Glyma10g44560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g39340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g249300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g39340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g39340

Limit To All Plant Sequences

>Glyma20g39340.2   sequence type=transcript   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTCTAGTTAGAGTGAATCCATGACCGTGACCATGGCGGCTGCGTTTACAATCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGAGGTGGTTCTTGTGTAATTTTGTTGGTTATTCCTTCTATTAACTTGTTGAGTTGAGAAGGGAAAGAGGGGCGGGGAAGAAGAAACTTTGGCTTTCTTAAATTTTAGTCTGACTATTCTTAAAATATGTTCTGTAACACCTTATTTTCACACTGAACCTACAAACTTTTAGCAGCCACATGTATTCTGGTAGAACTATAGTTTGAGTTGTCGTCGGGTTGGACAATTTAATACCCCATTTGAATGGTATCTTCTTAAGCCAAAGTGCAGTTTCCATGGGGAATTGGATGGCTAGAGAATTATTGGAGTCTTCTACAAGATGCATCATCAAATGTGGAATTCATTTAATTGAATTTGGAAAGAATGCACTTCTTTAAATGCTTCTCGTGATGCTTTAGCAGGCGATCAATAGAACGTGTAATAATTTAGATTAGAAATGTTAAAAATAATTTTTTTATTCTATTGAAGAATGTTAGG

>Glyma20g39340.3   sequence type=transcript   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTCTAGTTAGAGTGAATCCATGACCGTGACCATGGCGGCTGCGTTTACAAGTACAAGTGCAACACTGAGACTGGTAATTAGTTTTTGTTGAAATGAATATTATTATTAATGATAGGGTTCATTTGTGTGTGTTGTGTTGGCAGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGAGGTGGTTCTTGTGTAATTTTGTTGGTTATTCCTTCTATTAACTTGTTGAGTTGAGAAGGGAAAGAGGGGCGGGGAAGAAGAAACTTTGGCTTTCTTAAATTTTAGTCTGACTATTCTTAAAATATGTTCTGTAACACCTTATTTTCACACTGAACCTACAAACTTTTAGCAGCCACATGTATTCTGGTAGAACTATAGTTTGAGTTGTCGTCGGGTTGGACAATTTAATACCCCATTTGAATGGTATCTTCTTAAGCCAAAGTGCAGTTTCCATGGGGAATTGGATGGCTAGAGAATTATTGGAGTCTTCTACAAGATGCATCATCAAATGTGGAATTCATTTAATTGAATTTGGAAAGAATGCACTTCTTTAAATGCTTCTCGTGATGCTTTAGCAGGCGATCAATAGAACGTGTAATAATTTAGATTAGAAATGTTAAAAATAATTTTTTTATTCTATTGAAGAATGTTAGG

Coding sequences of Glyma20g39340

Limit To All Plant Sequences

>Glyma20g39340.1   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGTGACCATGGCGGCTGCGTTTACAAGTACAAGTGCAACACTGAGACTGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA

>Glyma20g39340.2   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA

>Glyma20g39340.3   sequence type=CDS   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATTATTATTAATGATAGGGTTCATTTGTGTGTGTTGTGTTGGCAGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA

Predicted protein sequences of Glyma20g39340

Limit To All Plant Sequences

>Glyma20g39340.1   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTMAAAFTSTSATLRLSNVGESRGLQLRKCNPNPNKLKVMGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*

>Glyma20g39340.2   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*

>Glyma20g39340.3   sequence type=predicted peptide   gene model=Glyma20g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIIINDRVHLCVLCWQSNVGESRGLQLRKCNPNPNKLKVMGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA*

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