SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16970 | AT | Annotation by Michelle Graham. TAIR10: KU70 homolog | chr1:5801159-5805724 REVERSE LENGTH=621 | SoyBase | E_val: 0 | ISS |
| GO:0000723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via nonhomologous end joining | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005958 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-dependent protein kinase-DNA ligase 4 complex | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003690 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0004003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| K10884 | KO | ATP-dependent DNA helicase 2 subunit 1 | JGI | ISS | |
| KOG2327 | KOG | DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) | JGI | ISS | |
| PTHR12604 | Panther | KU AUTOANTIGEN DNA HELICASE | JGI | ISS | |
| PTHR12604:SF2 | Panther | KU AUTOANTIGEN K86 DNA HELICASE-RELATED | JGI | ISS | |
| PF02037 | PFAM | SAP domain | JGI | ISS | |
| PF02735 | PFAM | Ku70/Ku80 beta-barrel domain | JGI | ISS | |
| PF03730 | PFAM | Ku70/Ku80 C-terminal arm | JGI | ISS | |
| PF03731 | PFAM | Ku70/Ku80 N-terminal alpha/beta domain | JGI | ISS | |
| UniRef100_A7MAS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ku70-like protein n=1 Tax=Vigna radiata RepID=A7MAS2_VIGRA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DE8E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DE8E related cluster n=1 Tax=unknown RepID=UPI000233DE8E | SoyBase | E_val: 0 | ISS |
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Glyma20g39280 not represented in the dataset |
Glyma20g39280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44521 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g248800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g39280.2 sequence type=transcript gene model=Glyma20g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAAAATTTCCCGTTGTTTGGTTTGGTAAAGGCAAAGGGCACTGCGTTGACGGTCGAAATTCTGGGCGCGCATTAGAGAGAAAAAAGGGTTTGTATTTGAGAACTGAGAAGTGGGGAAGATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGGTCCATGATACAGCTCAATCGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGAGCAAGGGGCTGACGTTTTTGTTAATGATTTTGCAACCTCGATAACTAGAATGCAAGACTCCTCTTAGCCACCAGAGCTGCTAAATCGATGTTTGGTTTATTATTGTTGACCCGGTTTGGATAAAAGACTGATTTGTACTTGACTGATCAACATGGCAGTATAGTATGTAATAGCATATTTTACTGGTAGAAGATAATCCTTGTTAGACCTCCAACCACAAAGTAACACATCTTATTTTGCAAAATGTGAAGTTATTTATATCTTCCTTTTTATTCACGCATACCTTTTAAAAGTCTATAAGTTGTTAACATCAGTCCAATTATGATCATAACCCAACTAACATCATTATAGACAGGGAAAT
>Glyma20g39280.1 sequence type=CDS gene model=Glyma20g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGA >Glyma20g39280.2 sequence type=CDS gene model=Glyma20g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGGTCCATGATACAGCTCAATCGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGA
>Glyma20g39280.1 sequence type=predicted peptide gene model=Glyma20g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLDGDDNDNDIFRDDEDDPQAQLSLLENESSKEYVVYLVDASPKMFSTTCPAEEDDQNGETHFHIAISCISQTLESQIINRSYDQVAICFFNTREKNNLQDLNSVFVFNVPEREFLDRPTARLIKEFYQLEESFSKIIGSQHGIVSGTRENSLYNAIWAAQALLRKGSAKTVDKRILLFTNDDDPFGSIKGAVKSDMTRMTLQRAKDAQDLGISIELLPLSHPDEVFNVSQFYADLIGLEGDDLVDFMPSAGKKLEDMKDQLRKRMFTKRIVKRLKFMIVNGISIELNSYALIRPTVPGAITWLDSVTNHPLKIERTFICVDTGALVEEPTKRFLPYKNQNIIFSMKQLSEIKRVSTGHLHLLGFKPLSCLRDYYNLKPSTFLYPSDEGTDSSMCMFIALHSFAVAFSGSSSRPQLVALIAQEEVIQSGGQIEPPGMHMIYLPYSDDIRFVEERYSDTSGMVNIASDDQIKKAANLIKRIDLKDFSVCQISNPALQRHYAVLQALALEEDDIPEMKDESLPDEEGLARPGVVRALEEFKTSVYGDNYDEENEPGTEKPTEASKKRKANAEFATKECENYDWGDLADTGKLKDLTVVELKYYLTAHNLPVSGKKEAIISRILTHMAK* >Glyma20g39280.2 sequence type=predicted peptide gene model=Glyma20g39280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLDGDDNDNDIFRDDEDDPQAQLSLLENESSKEYVVYLVDASPKMFSTTCPAEEDDQNGETHFHIAISCISQTLESQIINRSYDQVAICFFNTREKNNLQDLNSVFVFNVPEREFLDRPTARLIKEFYQLEESFSKIIGSQHGIVSGTRENSLYNAIWAAQALLRKGSAKTVDKRILLFTNDDDPFGSIKGAVKSDMTRMTLQRAKDAQDLGISIELLPLSHPDEVFNVSQFYADLIGLEGDDLVDFMPSAGKKLEDMKDQLRKRMFTKRIVKRLKFMIVNGISIELNSYALIRPTVPGAITWLDSVTNHPLKIERTFICVDTGALVEEPTKRFLPYKNQNIIFSMKQLSEIKRVSTGHLHLLGFKPLSCLRDYYNLKPSTFLYPSDEGTDSSMCMFIALHRSMIQLNRFAVAFSGSSSRPQLVALIAQEEVIQSGGQIEPPGMHMIYLPYSDDIRFVEERYSDTSGMVNIASDDQIKKAANLIKRIDLKDFSVCQISNPALQRHYAVLQALALEEDDIPEMKDESLPDEEGLARPGVVRALEEFKTSVYGDNYDEENEPGTEKPTEASKKRKANAEFATKECENYDWGDLADTGKLKDLTVVELKYYLTAHNLPVSGKKEAIISRILTHMAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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