SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13020 | AT | Annotation by Michelle Graham. TAIR10: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397 | SoyBase | E_val: 2.00E-151 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4675 | KOG | Uncharacterized conserved protein, contains ENT domain | JGI | ISS | |
| PF03735 | PFAM | ENT domain | JGI | ISS | |
| UniRef100_F4K2F0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Emsy N Terminus and plant Tudor-like domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4K2F0_ARATH | SoyBase | E_val: 1.00E-148 | ISS |
| UniRef100_I1NJC5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NJC5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g39100 not represented in the dataset |
Glyma20g39100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g246900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g39100.2 sequence type=transcript gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGAATTTTGCTCCTATATTAAAATGATAGTAAAATAAAAAATAGCCCCAAATATTTTGAAAAATTGTGAGCATCATCCCTTCACATCGCTAGGCAAATCTGCAAGGAAGACATTGATCGCGTTTCATTGGCTTCTATGCTCGGAATTCAGCTTTTGCGTCTGAATTAGGCTGCGTGTTGTTCCCGATTGTTTGTTTTTCAATCGTTAGCAGCAGAGCGTGCTTGAACAAGTTAATTGGTTGGTTTTGTGATTTTGACGCTTGGGGACCGCAATGGAATTTGATCTCTGCGATAGCAGTGGAACAGATGATGGTCTTCCTCCTTCCCATCAATGTCTAAATAGATTTCAATGACCAGATCATGCCACTGGAACTGGAAACGGAAGATCTGCAATTGTAGGCCTTGGTCCATATCCTCGGATGCAGAACGACATGGAAACACAAATCCATAACATTGAGCAAGAAGCATACACCTCTGTCCTGCGGGCTTTTAAAGCTCAATCTGATGCAATCACTTGGGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCCACAACATAAGGGAGTGGAGAAAGGGAAATGGGCTCCAATCTGGAGCAGTAAATACTGCTCAACAAGTTCATGATCACAATACCAGCCCTACCATTTTGGCATCTCGTAAGAAACAAAAGAAATCACAATCTGTGGCTTCATTATCCTTGGGTGCACCATCTCCTGCGGTTCATCCATCTATGCAACCATCATCATCCGCATTGAAGCATGGACCTCCATCAGGAACTAAGACCAAAAAGCAAAAATCATTCCCTTCTACAGGACTTACAAGCCAAAGCCAGGTCACTAATCAGGGGGGTTCTTCAGGTGCCTTTGCAACAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGATATCTCCAGAAGATATTCTTTGGGAGGGTGAAGATCCTGGAATATCCCATAAAGGATGCCAGCCCGGTCCAGGTAGAGGATTGAAGAAGTCTATGCCTCACGGTGGTGCAGTTACTGGTGCTGGAAGAGGTAGGGGAATGATGAAGGTGCAGCCTAAGAAAGATTTCACTTTGTCACAAAAAGGGGGCAGGAAGAAGGCTACAAATGATATTGAGATACTCCATACAGATACCCTTATCAAGGAGGTTGAAAAGGTTTTTACTGCAAGCCATCCTGATCCCATGGAAATTGAGAAAGCAAAGAAAATGCTAAAAGAACATGAACAGGCTCTTGTCAATGCAATTGCCAGGCTCGGAGATGTGTCTGAGGGTGAAAGTGATGGAGAACCTCCGTTTTCGCAAGGGCTGTCAATGGATCAGGAAAAACGCTGGAAGAAACAACAGTATAATTCGGGTGGTGTTGGAGTACCAGATGGTTCAAATGGTGATAAATTACAAAGAGAAACTAGTGCTCCATCTGAGTATCCGCATGAAGTTGGCAACAACGCATGACTAATGTAATATGCTATTATTATTGTATAATTGTAGTTTCTTTTTGTATCTATTAAGTTGTGCAGCGGGTAGCTTCAATCTAGAGAGACA >Glyma20g39100.3 sequence type=transcript gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAGAAATCCATTATTATCTGTAGAAAATAATTATTAGCTGGTGAATTTTGCTCCTATATTAAAATGATAGTAAAATAAAAAATAGCCCCAAATATTTTGAAAAATTGTGAGCATCATCCCTTCACATCGCTAGGCAAATCTGCAAGGAAGACATTGATCGCGTTTCATTGGCTTCTATGCTCGGAATTCAGCTTTTGCGTCTGAATTAGGCTGCGTGTTGTTCCCGATTGTTTGTTTTTCAATCGTTAGCAGCAGAGCGTGCTTGAACAAGTTAATTGGTTGGTTTTGTGATTTTGACGCTTGGGGACCGCAATGGAATTTGATCTCTGCGATAGCAGTGGAACAGATGATGGTCTTCCTCCTTCCCATCAATGTCTAAATAGATTTCAATGACCAGATCATGCCACTGGAACTGGAAACGGAAGATCTGCAATTGTAGGCCTTGGTCCATATCCTCGGATGCAGAACGACATGGAAACACAAATCCATAACATTGAGCAAGAAGCATACACCTCTGTCCTGCGGGCTTTTAAAGCTCAATCTGATGCAATCACTTGGGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCCACAACATAAGGGAGTGGAGAAAGGGAAATGGGCTCCAATCTGGAGCAGTAAATACTGCTCAACAAGTTCATGATCACAATACCAGCCCTACCATTTTGGCATCTCGTAAGAAACAAAAGAAATCACAATCTGTGGCTTCATTATCCTTGGGTGCACCATCTCCTGCGGTTCATCCATCTATGCAACCATCATCATCCGCATTGAAGCATGGACCTCCATCAGGAACTAAGACCAAAAAGCAAAAATCATTCCCTTCTACAGGACTTACAAGCCAAAGCCAGGTCACTAATCAGGGGGGTTCTTCAGGTGCCTTTGCAACAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGATATCTCCAGAAGATATTCTTTGGGAGGGTGAAGATCCTGGAATATCCCATAAAGGATGCCAGCCCGGTCCAGGTAGAGGATTGAAGAAGTCTATGCCTCACGGTGGTGCAGTTACTGGTGCTGGAAGAGGTAGGGGAATGATGAAGGTGCAGCCTAAGAAAGATTTCACTTTGTCACAAAAAGGGGGCAGGAAGAAGGCTACAAATGATATTGAGATACTCCATACAGATACCCTTATCAAGGAGGTTGAAAAGGTTTTTACTGCAAGCCATCCTGATCCCATGGAAATTGAGAAAGCAAAGAAAATGCTAAAAGAACATGAACAGGCTCTTGTCAATGCAATTGCCAGGCTCGGAGATGTGTCTGAGGGTGAAAGTGCCAGATGGAGAACCTCCGTTTTCGCAAGGGCTGTCAATGGATCAGGAAAAACGCTGGAAGAAACAACAGTATAATTCGGGTGGTGTTGGAGTACCAGATGGTTCAAATGGTGATAAATTACAAAGAGAAACTAGTGCTCCATCTGAGTATCCGCATGAAGTTGGCAACAACGCATGACTAATGTAATATGCTATTATTATTGTATAATTGTAGTTTCTTTTTGTATCTATTAAGTTGTGCAGCGGGTAGCTTCAATCTAGAGAGACAAC
>Glyma20g39100.1 sequence type=CDS gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAACGACATGGAAACACAAATCCATAACATTGAGCAAGAAGCATACACCTCTGTCCTGCGGGCTTTTAAAGCTCAATCTGATGCAATCACTTGGGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCCACAACATAAGGGAGTGGAGAAAGGGAAATGGGCTCCAATCTGGAGCAGTAAATACTGCTCAACAAGTTCATGATCACAATACCAGCCCTACCATTTTGGCATCTCGTAAGAAACAAAAGAAATCACAATCTGTGGCTTCATTATCCTTGGGTGCACCATCTCCTGCGGTTCATCCATCTATGCAACCATCATCATCCGCATTGAAGCATGGACCTCCATCAGGAACTAAGACCAAAAAGCAAAAATCATTCCCTTCTACAGGACTTACAAGCCAAAGCCAGGTCACTAATCAGGGGGGTTCTTCAGGTGCCTTTGCAACAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGATATCTCCAGAAGATATTCTTTGGGAGGGTGAAGATCCTGGAATATCCCATAAAGGATGCCAGCCCGGTCCAGGTAGAGGATTGAAGAAGTCTATGCCTCACGGTGGTGCAGTTACTGGTGCTGGAAGAGGTAGGGGAATGATGAAGGTGCAGCCTAAGAAAGATTTCACTTTGTCACAAAAAGGGGGCAGGAAGAAGGCTACAAATGATATTGAGATACTCCATACAGATACCCTTATCAAGGAGGTTGAAAAGGTTTTTACTGCAAGCCATCCTGATCCCATGGAAATTGAGAAAGCAAAGAAAATGCTAAAAGAACATGAACAGGCTCTTGTCAATGCAATTGCCAGGCTCGGAGATGTGTCTGAGGGTGAAAGTGGTAATAACTAA >Glyma20g39100.2 sequence type=CDS gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAACGACATGGAAACACAAATCCATAACATTGAGCAAGAAGCATACACCTCTGTCCTGCGGGCTTTTAAAGCTCAATCTGATGCAATCACTTGGGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCCACAACATAAGGGAGTGGAGAAAGGGAAATGGGCTCCAATCTGGAGCAGTAAATACTGCTCAACAAGTTCATGATCACAATACCAGCCCTACCATTTTGGCATCTCGTAAGAAACAAAAGAAATCACAATCTGTGGCTTCATTATCCTTGGGTGCACCATCTCCTGCGGTTCATCCATCTATGCAACCATCATCATCCGCATTGAAGCATGGACCTCCATCAGGAACTAAGACCAAAAAGCAAAAATCATTCCCTTCTACAGGACTTACAAGCCAAAGCCAGGTCACTAATCAGGGGGGTTCTTCAGGTGCCTTTGCAACAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGATATCTCCAGAAGATATTCTTTGGGAGGGTGAAGATCCTGGAATATCCCATAAAGGATGCCAGCCCGGTCCAGGTAGAGGATTGAAGAAGTCTATGCCTCACGGTGGTGCAGTTACTGGTGCTGGAAGAGGTAGGGGAATGATGAAGGTGCAGCCTAAGAAAGATTTCACTTTGTCACAAAAAGGGGGCAGGAAGAAGGCTACAAATGATATTGAGATACTCCATACAGATACCCTTATCAAGGAGGTTGAAAAGGTTTTTACTGCAAGCCATCCTGATCCCATGGAAATTGAGAAAGCAAAGAAAATGCTAAAAGAACATGAACAGGCTCTTGTCAATGCAATTGCCAGGCTCGGAGATGTGTCTGAGGGTGAAAGTGATGGAGAACCTCCGTTTTCGCAAGGGCTGTCAATGGATCAGGAAAAACGCTGGAAGAAACAACAGTATAATTCGGGTGGTGTTGGAGTACCAGATGGTTCAAATGGTGATAAATTACAAAGAGAAACTAGTGCTCCATCTGAGTATCCGCATGAAGTTGGCAACAACGCATGA >Glyma20g39100.3 sequence type=CDS gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAACGACATGGAAACACAAATCCATAACATTGAGCAAGAAGCATACACCTCTGTCCTGCGGGCTTTTAAAGCTCAATCTGATGCAATCACTTGGGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCCACAACATAAGGGAGTGGAGAAAGGGAAATGGGCTCCAATCTGGAGCAGTAAATACTGCTCAACAAGTTCATGATCACAATACCAGCCCTACCATTTTGGCATCTCGTAAGAAACAAAAGAAATCACAATCTGTGGCTTCATTATCCTTGGGTGCACCATCTCCTGCGGTTCATCCATCTATGCAACCATCATCATCCGCATTGAAGCATGGACCTCCATCAGGAACTAAGACCAAAAAGCAAAAATCATTCCCTTCTACAGGACTTACAAGCCAAAGCCAGGTCACTAATCAGGGGGGTTCTTCAGGTGCCTTTGCAACAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGGGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGATATCTCCAGAAGATATTCTTTGGGAGGGTGAAGATCCTGGAATATCCCATAAAGGATGCCAGCCCGGTCCAGGTAGAGGATTGAAGAAGTCTATGCCTCACGGTGGTGCAGTTACTGGTGCTGGAAGAGGTAGGGGAATGATGAAGGTGCAGCCTAAGAAAGATTTCACTTTGTCACAAAAAGGGGGCAGGAAGAAGGCTACAAATGATATTGAGATACTCCATACAGATACCCTTATCAAGGAGGTTGAAAAGGTTTTTACTGCAAGCCATCCTGATCCCATGGAAATTGAGAAAGCAAAGAAAATGCTAAAAGAACATGAACAGGCTCTTGTCAATGCAATTGCCAGGCTCGGAGATGTGTCTGAGGGTGAAAGTGCCAGATGGAGAACCTCCGTTTTCGCAAGGGCTGTCAATGGATCAGGAAAAACGCTGGAAGAAACAACAGTATAA
>Glyma20g39100.1 sequence type=predicted peptide gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQNDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIHNIREWRKGNGLQSGAVNTAQQVHDHNTSPTILASRKKQKKSQSVASLSLGAPSPAVHPSMQPSSSALKHGPPSGTKTKKQKSFPSTGLTSQSQVTNQGGSSGAFATKGPAEAASYDPWIGRKVWTRWPEDNHFYEAVITDYNAAEGLHALVYDMNSANETWEWVNLKEISPEDILWEGEDPGISHKGCQPGPGRGLKKSMPHGGAVTGAGRGRGMMKVQPKKDFTLSQKGGRKKATNDIEILHTDTLIKEVEKVFTASHPDPMEIEKAKKMLKEHEQALVNAIARLGDVSEGESGNN* >Glyma20g39100.2 sequence type=predicted peptide gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQNDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIHNIREWRKGNGLQSGAVNTAQQVHDHNTSPTILASRKKQKKSQSVASLSLGAPSPAVHPSMQPSSSALKHGPPSGTKTKKQKSFPSTGLTSQSQVTNQGGSSGAFATKGPAEAASYDPWIGRKVWTRWPEDNHFYEAVITDYNAAEGLHALVYDMNSANETWEWVNLKEISPEDILWEGEDPGISHKGCQPGPGRGLKKSMPHGGAVTGAGRGRGMMKVQPKKDFTLSQKGGRKKATNDIEILHTDTLIKEVEKVFTASHPDPMEIEKAKKMLKEHEQALVNAIARLGDVSEGESDGEPPFSQGLSMDQEKRWKKQQYNSGGVGVPDGSNGDKLQRETSAPSEYPHEVGNNA* >Glyma20g39100.3 sequence type=predicted peptide gene model=Glyma20g39100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQNDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIHNIREWRKGNGLQSGAVNTAQQVHDHNTSPTILASRKKQKKSQSVASLSLGAPSPAVHPSMQPSSSALKHGPPSGTKTKKQKSFPSTGLTSQSQVTNQGGSSGAFATKGPAEAASYDPWIGRKVWTRWPEDNHFYEAVITDYNAAEGLHALVYDMNSANETWEWVNLKEISPEDILWEGEDPGISHKGCQPGPGRGLKKSMPHGGAVTGAGRGRGMMKVQPKKDFTLSQKGGRKKATNDIEILHTDTLIKEVEKVFTASHPDPMEIEKAKKMLKEHEQALVNAIARLGDVSEGESARWRTSVFARAVNGSGKTLEETTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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