SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54380 | AT | Annotation by Michelle Graham. TAIR10: spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515 | SoyBase | E_val: 1.00E-75 | ISS |
| GO:0000245 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spliceosomal complex assembly | SoyBase | N/A | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| K13130 | KO | survival of motor neuron protein-interacting protein 1 | JGI | ISS | |
| PTHR12794 | Panther | GEMIN2 | JGI | ISS | |
| PF04938 | PFAM | Survival motor neuron (SMN) interacting protein 1 (SIP1) | JGI | ISS | |
| UniRef100_G7IAZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Survival of motor neuron protein-interacting protein n=1 Tax=Medicago truncatula RepID=G7IAZ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D7FA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D7FA related cluster n=1 Tax=unknown RepID=UPI000233D7FA | SoyBase | E_val: 0 | ISS |
|
Glyma20g39001 not represented in the dataset |
Glyma20g39001 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44224 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g245800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g39001.1 sequence type=CDS gene model=Glyma20g39001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGATGTTTCAGATTCTCAAGAACAGCCTGTTCTTGATTCCGCTGAACTGGAAATGAAGAAGAAGCGACTGTTGGTGGAGCTGGAATCTGCGCTGGGCGGTGAGAAATCGGTGACGGCGCAGGCGTCTTCTTCTTCTTCTTCCTCCTTAGGCTTGGGTATTGAGGTTATCGACGAAACGGCGTTGCTTGACTCCGTTGCGAAGAAGAACGGAGGTTCAAGAAGAACCAAGAACAACAACAATGGTCACAATCACAAGAAGTCGAAGCCCTCAAATAAGATTGGGAACAAAAAGTACTCTCGTAAGGAGTTGGAGTCTCTGAGATTCGTGAACATGGCCCGACAACGCAAGTTCTGGAAAGCAATTCACGCTGCCTTTCAAACCACCGTGGCCATGGAGTATGATGCTTTAGCCTCCTCACCCCTGCCGCATAACAAACCAATCCTCATTTTGCAATTGCTTTCAGGTGCAGTGTTTTGTGAAATTAGGGATAGTGAAAAAGTGACTCCTGTTGACCCTTCTTGTAGTCATAATCTTGTGGGTGAGGATGGGTGCTCAATTGTAAAAGAGTGCAGTGAAGAAGATGATGGTAGTGATGATGACTATGCTAGCATCCAAAGGCCTGCCTTTATGGTTGATGGAGAACCTAATTTTGATTCTGGTCCACCAGAAGATGGATGGGAATATCTTAGGCGTGTCAGGTGGGAGGCACATCAAATTCCAAAAGTGAAGGTAGCAAAACTTGATAGAGGTAAACTTAACAAGGAACAAAGTGCTTACATGCCCCAGATTCCTGATATTGCCAAGTGTCCAGAGCATCTGCTGCCACTGAAAGAGTGGGAGGATGCATTTCTTGCCGAGTTTTCTGCACTGAGAACGAATTTCTCATGCCTTGATGGTTCTAGTGCCATACATTCTGGAAATCTTCATGTTCATTCCTCACAAATAGTTGGGAACAATTGTGGAGAATTTTCTAGTGTTATGAGCAGAGATGTGTTACTTAATAATCATTTGAGAATTGGTAATGCAAATGATCAACCTACGAACTTGACTGCTGAAGATAAGGATAGAACACTGTCTTCAGAGAATCCAGAAGCGAAAACTTCAGCTGATCAAAGAAGCAGCAGCAGCTCCCCGACTCCCCCTTTGCTTTCCGTAATCTTAGCAATGGACTCTGTAGCCCGGGTATCAAGTTTGTTGAAACGAATTAGGTTGCTAGAGGCTGCAGACACTATGACAAGGAATGATTGCATGTGGCTTTTTGCTCTCTGTGCAACAGTTGATGCTCCACTAGATGCTGACACTTGTGCTGCTCTCAGGAGTCTGCTAAGGAAGTGTGCTAGCATCCGTGCCGGAAAGGCTGAATTGGATGAGGAGGTTGTAATGTTGAATATATTGGCTACAATTTCTGGGAGCTACTTTGGGCAATCTGAAAACTGA
>Glyma20g39001.1 sequence type=predicted peptide gene model=Glyma20g39001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADVSDSQEQPVLDSAELEMKKKRLLVELESALGGEKSVTAQASSSSSSSLGLGIEVIDETALLDSVAKKNGGSRRTKNNNNGHNHKKSKPSNKIGNKKYSRKELESLRFVNMARQRKFWKAIHAAFQTTVAMEYDALASSPLPHNKPILILQLLSGAVFCEIRDSEKVTPVDPSCSHNLVGEDGCSIVKECSEEDDGSDDDYASIQRPAFMVDGEPNFDSGPPEDGWEYLRRVRWEAHQIPKVKVAKLDRGKLNKEQSAYMPQIPDIAKCPEHLLPLKEWEDAFLAEFSALRTNFSCLDGSSAIHSGNLHVHSSQIVGNNCGEFSSVMSRDVLLNNHLRIGNANDQPTNLTAEDKDRTLSSENPEAKTSADQRSSSSSPTPPLLSVILAMDSVARVSSLLKRIRLLEAADTMTRNDCMWLFALCATVDAPLDADTCAALRSLLRKCASIRAGKAELDEEVVMLNILATISGSYFGQSEN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
