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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07160 | AT | Annotation by Michelle Graham. TAIR10: glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890 | SoyBase | E_val: 0 | ISS |
| 2.4.1.- | EC | Hexosyltransferases | JGI | ISS | |
| GO:0006075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0055047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: generative cell mitosis | SoyBase | N/A | ISS |
| GO:0080092 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth | SoyBase | N/A | ISS |
| GO:0000148 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity | SoyBase | N/A | ISS |
| K11000 | KO | callose synthase [EC:2.4.1.-] | JGI | ISS | |
| KOG0916 | KOG | 1,3-beta-glucan synthase/callose synthase catalytic subunit | JGI | ISS | |
| PTHR12741 | Panther | UNCHARACTERIZED DUF605 | JGI | ISS | |
| PTHR12741:SF4 | Panther | gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2 | JGI | ISS | |
| PF02364 | PFAM | 1,3-beta-glucan synthase component | JGI | ISS | |
| UniRef100_B9SQ54 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1,3-beta-glucan synthase, putative n=1 Tax=Ricinus communis RepID=B9SQ54_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DE80 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DE80 related cluster n=1 Tax=unknown RepID=UPI000233DE80 | SoyBase | E_val: 0 | ISS |
|
Glyma20g38860 not represented in the dataset |
Glyma20g38860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g244900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38860.1 sequence type=CDS gene model=Glyma20g38860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCGAGCTGAGGAGCTTTGGGAGCGGTTAGTCCGTGCTGCATTGAGGAGGGAAAGGACTGGTGATGATGCATACGGGCAGCCTGTTGGTGGAATTGCTGGAAATGTACCATCCGCCCTAGCTAAAAATAGGGATATCGATGAAATTTTGAGAGTTGCTGATGAAATTGAAGATGATGATCCCAATATCTCTAGAATATTATGTGAGCATGCATATTCATTATCTCAAAATTTGGATCCTAACAGTGAAGGCCGAGGTGTTTTACAATTCAAGACTGGTTTGATGTCTGTCATCAAGCAAAAGCTGGCTAAAAGAGAAGCTGGAACCATAGATAGAAGTCAGGACATAGCTCGGTTACAAGAGTTCTACAAGAGTTATAGAGAGAAGCATAATGTGGATAAATTACGTGAGGAAGAAATGAAGTTACGGGAATCTGGTGCTTTCAGCCGGGATCTTGGCGAGTTGGAGCGCAAGACTGTGAAGAGGAAAAGGGTTTTTGCTACCTTAAAGGTTTTGGGAACAGTACTTGAGCAGCTGAGTGAAGAAATTCCTGATGAGCTGAAGCGAGTCATGGACTCAGATTCTGCATTGACAGAGGATCTGGTTGCGTACAACATCATCCCGTTAGATGCTTCCTCTTCAACAAATGCTATTGTTTATTTCCCTGAGGTGCAAGCAGCAGTTTCAGCTTTGAAGTATTTCAATGGCTTGCCGGAGTTGCCTAGGGGCTATTTCCTTCAACCTACAAGGAATGCTAACATGTTCGATTTTTTGCAGTGTACCTTTGGATTTCAGAAAGACAATGTAGCTAATCAGCATGAACACATAGTTCACCTGCTTGCAAATGAGCAATCTCGACTAAGAATTCCAGAAGGAGCTGAACCCAAATTGGATGAAGTTGCCGTGCAGGAAATATTCCTTAAGTCCCTTCAGAATTACATAAAGTGGTGTGATTATTTAGGCATTCAGCCTGTTTGGAGCAGTTTGGAGGCTGTCAGTAAAGAGAAGAAATTACTATATGTTTCTTTGTACTTCCTAATATGGGGTGAAGCCTCAAATATCAGATTTCTACCAGAATGCTTGTGCTACATATACCATCATATGGCTAGAGAGATGGATGAGATTTTAAGGCAGCAGATTGCACAGCCAGCTAATAGTTGCACTTATGATTCTAAGGATGGTGTCTCATTTCTTGATAATGTTATCTTTCCTCTCTATGATATCGTTTCCGCAGAAGCTGCAAACAATGATAATGGGAAAGCACCTCATTCCTCGTGGAGGAATTATGATGATTTTAATGAGTATTTCTGGTCACTCCGTTGCTTTGAGCTTAGTTGGCCATGGCGCAAAACTTCTTCGTTTTTCCAAAAGCCACTACCCAGATCAAAGAGAATGCTTATATCTGGCAGCAGTAGGCATCAGGGGAAAACATCTTTTGTGGAGCATCGAACTTTTTTTCATCTTTATCATAGCTTCCACCGATTGTGGATATTTCTATTCATGATGTTTCAGGGTCTAACCATCCTTGCATTCAATGATGGAAAGTTTAATGCCAAGACTTTGCGAGAAATTCTTAGTCTTGGACCTACATTTGTTGTGATGAAACTTTTTGAGAGTGTTCTGGACATTTTCATGATGTATGGTGCATATTCAACAACAAGACGCTTAGCTGTCTCTCGAATTTTTTTACGTTTTCTTTGGTTTAGCCTTGCTTCAGTTTTCATAACTTTCCTTTATGTAAAAGCACTCCAGGAAGAGAGTAAAAGTAATGGAAACTCGGTTGTCTTCAGATTGTATGTGATTGTCATAGGGATTTATGCTGGTGTCCAATTTTTCATTAGTTTCCTCATGCGGATACCGGCATGTCATCGTCTAACAAATCAATGTGGTCGTTGGCCTTTAGTTCACTTTGTGAAGTGGCTGCGCCAGGAACGGCATTATGTTGGACGGGGAATGTATGAAAGGAGTTCAGATTTCATAAAGTATATGCTGTTTTGGCTTGTTATTTTGAGTGGAAAATTTGCATTTGCTTACTTTCTTCAGATCAGGCCTCTGGTGAAACCAACAAAGGCTATTATAATAGCGGATAACATAAATTACTCTTGGCATGATTTTGTCTCTAAAAATAATCATAATGCTTTGACAGTTGTTAGCGTGTGGGCTCCTGTGGTTGCTATTTATCTTCTAGATATTTATGTGTTTTACACACTTGTATCGGCTGTCTACGGATTCTTACTGGGGGCAAGAGATCGACTGGGAGAGATTAGGTCATTGGAAGCACTGCACAAACTTTTTGAGCAGTTTCCTGGAGCTTTTATGGACACACTTCATGTTCCTCTACCCAACAGGAGTTCCCATCAGTCTTCTGTTCAGGTTGTGGAGAATAGCAAGGCTGATGCTGCTCGGTTTGCCCCCTTTTGGAATGAGATCATAAGAAATCTAAGGGAGGAGGATTATGTTACCAACTTCGAAATGGAGTTGCTTTTAATGCCTAGGAATTCTGGGGATCTTCCTCTGGTTCAATGGCCACTTTTTCTACTTGCAAGCAAGATATTTTTGGCTAGGGATATTGCTGTTGAGAGTAAAGATACTCAAGATGAGCTTTGGGATAGGATTTCCCGAGATGATTATATGATGTATGCTGTTCAGGAGTGTTACTATACTATTAAATTCATTTTGACAGAGATATTAGATGATGTGGGAAGGAAGTGGGTTGAAAGGATATATGATGATATTAATGCTAGTATCACAAAGAGGAGTATTGATGGGGACTTCAAACTAAGTAAATTGGCTGTTGTGATATCAAGAGTAACTGCATTGATGGGAATCCTGAAAGAGACTGAAACACCTGAACTGGAAAGGGGTGCAGTTAGGGCTGTGCAGGATCTGTATGACGTTATGCGACATGATGTCCTTAGCATAAATCTGAGGGAGAATTATGACACGTGGAGTTTACTGAGCAAAGCTAGGGATGAAGGGCATTTGTTTGAAAAGTTAAAATGGCCCAAGAATACAGATTTAAAAATGCAAGTCAAAAGATTGTATTCACTGCTGACTATCAAAGAGTCTGCCTCAAGCATTCCTAAAAACCTTGAGGCCAGGCGACGGCTGCAGTTTTTCACAAATTCACTTTTTATGAAGATGCCTCGTGCAAAGCCAGTTCGGGAGATGTTATCCTTTAGTGTTTTCACTCCTTATTATTCTGAGATTGTGCTATATAGCATGGCTGAACTCCTAAAGAAAAATGAAGATGGCATTTCAATTTTGTTCTACCTTCAGAAGATATATCCAGATGAGTGGAAAAACTTTCTTGCCCGAATTGGCCGTGATGAAAACACACTTGAGAGTGAACTTTATGATAATCCTGGTGATATTCTTGAACTGCGATTTTGGGCTTCATATCGGGGGCAAACATTGGCTAGGACAGTTCGGGGGATGATGTATTATAGGAAAGCTCTTATGCTTCAGACCTATTTGGAGAGGACAACTGCTGGAGATTTGGAGGCTGCAATAGGTTGTGATGAAGTAACTAATACGCATGGCTTTGAATTATCCCCTGAGGCACGTGCCCAGGCAGATCTTAAGTTCACTTATGTTGTGACATGTCAAATTTATGGTAAGCAGAAAGAAGAGCAAAAGCCTGAGGCTGCTGATATTGCTTTACTTATGCAAAGAAATGAAGCTCTTCGGGTCGCTTTCATTGATGTTGTTGAAACTTTAAAAGAGGGAAAAGTGAACACAGAATACTACTCAAAGCTTGTGAAAGCTGATATCAATGGGAAAGACAAGGAGATATACTCAGTAAAATTACCTGGAAATCCCAAATTGGGAGAAGGGAAGCCCGAGAATCAAAATCATGCAATTATATTTACGCGTGGAAATGCAGTCCAAACAATTGACATGAATCAGGATAACTATTTTGAGGAGGCTTTGAAGATGAGGAACCTTCTTGAAGAATTTCATTCAGATCATGGGCTTCGTCCTCCTACTATACTTGGTGTTAGAGAACATGTCTTCACTGGCAGTGTCTCATCTTTAGCATCATTTATGTCCAATCAAGAAACTAGTTTTGTGACTTTGGGGCAGCGAGTTTTAGCAAATCCATTGAAGGTCCGCATGCACTATGGGCATCCTGATGTTTTTGATAGAATATTCCACATAACCCGTGGTGGTATCAGCAAGGCTTCCCGTGTTATCAACATTAGTGAAGATATCTATTCAGGATTCAATTCAACCTTACGTCAAGGAAATATTACACATCATGAATATATTCAGGTTGGAAAGGGAAGAGATGTTGGGCTCAATCAGATTGCACTATTTGAAGGAAAAGTTTCTGGTGGTAACGGTGAACAAGTTCTCAGTCGTGATGTATACAGACTTGGGCAGCTTTTTGATTTCTTCCGGATGCTGTCTTTTTATTTTACAACAGTTGGGTACTACTTTTGTACCATGCTAACAGTGCTGACTGTATATGCCTTTCTATATGGGAAAGCATATTTGGCACTGTCTGGTGTTGGTGAAATCCTTGAAGAAAGGGCCAGGATAAATAAGAACACTGCACTGAGTGCTGCTTTGAATACACAATTTCTCTTTCAAATTGGTATCTTCACTGCTGTGCCAATGATCTTGGGCTTCATTCTTGAGCAAGGTTTCTTGAAGGCCATTGTCAGTTTTGTCACAATGCAATTCCAGCTTTGCACTGTCTTTTTCACATTTTCCTTGGGTACAAGAACACATTATTTTGGTCGGACAATTCTTCATGGTGGTGCAAGGTATCAAGCAACTGGCCGCGGGTTTGTTGTTCGCCATATCAAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGAAGGTGGTGCACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGGAATTGGTGTTAAGGGAGAAGAAAGCTGGGAAGCTTGGTGGGAAGAAGAACTGGCTCATATCAGGAGCTTGGGTTCAAGGATAGCAGAAACCATTCTGAGTCTTAGATTTTTCATCTTTCAATATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGGTATTCACCTTTAGCCAGAAGATATCGGTCAATTTCCAGCTTCTTTTGCGCTTTATACAAGGAATCTCCCTTTTAGTTGCACTGGCTGGTTTAGTTGTAGCAGTTATATTGACTGAACTGTCTTTACCGGACATATTTGCTTCTATGTTGGCTTTCATTCCTACTGGTTGGGGAATTCTGTCAATTGCTGCTGCCTGGAAGCCGGTGATGAAGAGGTTTGGACTATGGAAATCTGTTAGATCAATTGCTCGGCTCTATGATGCTGGTATGGGAATGCTCATCTTTGTACCCATTGCCTTCTTTTCGTGGTTCCCATTTGTATCAACATTCCAAACTCGCCTAATGTTTAACCAGGCTTTTAGCCGAGGGTTAGAAATTTCTCTAATTCTAGCTGGGAACAATCACAATACTGGGATATAG
>Glyma20g38860.1 sequence type=predicted peptide gene model=Glyma20g38860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRAEELWERLVRAALRRERTGDDAYGQPVGGIAGNVPSALAKNRDIDEILRVADEIEDDDPNISRILCEHAYSLSQNLDPNSEGRGVLQFKTGLMSVIKQKLAKREAGTIDRSQDIARLQEFYKSYREKHNVDKLREEEMKLRESGAFSRDLGELERKTVKRKRVFATLKVLGTVLEQLSEEIPDELKRVMDSDSALTEDLVAYNIIPLDASSSTNAIVYFPEVQAAVSALKYFNGLPELPRGYFLQPTRNANMFDFLQCTFGFQKDNVANQHEHIVHLLANEQSRLRIPEGAEPKLDEVAVQEIFLKSLQNYIKWCDYLGIQPVWSSLEAVSKEKKLLYVSLYFLIWGEASNIRFLPECLCYIYHHMAREMDEILRQQIAQPANSCTYDSKDGVSFLDNVIFPLYDIVSAEAANNDNGKAPHSSWRNYDDFNEYFWSLRCFELSWPWRKTSSFFQKPLPRSKRMLISGSSRHQGKTSFVEHRTFFHLYHSFHRLWIFLFMMFQGLTILAFNDGKFNAKTLREILSLGPTFVVMKLFESVLDIFMMYGAYSTTRRLAVSRIFLRFLWFSLASVFITFLYVKALQEESKSNGNSVVFRLYVIVIGIYAGVQFFISFLMRIPACHRLTNQCGRWPLVHFVKWLRQERHYVGRGMYERSSDFIKYMLFWLVILSGKFAFAYFLQIRPLVKPTKAIIIADNINYSWHDFVSKNNHNALTVVSVWAPVVAIYLLDIYVFYTLVSAVYGFLLGARDRLGEIRSLEALHKLFEQFPGAFMDTLHVPLPNRSSHQSSVQVVENSKADAARFAPFWNEIIRNLREEDYVTNFEMELLLMPRNSGDLPLVQWPLFLLASKIFLARDIAVESKDTQDELWDRISRDDYMMYAVQECYYTIKFILTEILDDVGRKWVERIYDDINASITKRSIDGDFKLSKLAVVISRVTALMGILKETETPELERGAVRAVQDLYDVMRHDVLSINLRENYDTWSLLSKARDEGHLFEKLKWPKNTDLKMQVKRLYSLLTIKESASSIPKNLEARRRLQFFTNSLFMKMPRAKPVREMLSFSVFTPYYSEIVLYSMAELLKKNEDGISILFYLQKIYPDEWKNFLARIGRDENTLESELYDNPGDILELRFWASYRGQTLARTVRGMMYYRKALMLQTYLERTTAGDLEAAIGCDEVTNTHGFELSPEARAQADLKFTYVVTCQIYGKQKEEQKPEAADIALLMQRNEALRVAFIDVVETLKEGKVNTEYYSKLVKADINGKDKEIYSVKLPGNPKLGEGKPENQNHAIIFTRGNAVQTIDMNQDNYFEEALKMRNLLEEFHSDHGLRPPTILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYSGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVSGGNGEQVLSRDVYRLGQLFDFFRMLSFYFTTVGYYFCTMLTVLTVYAFLYGKAYLALSGVGEILEERARINKNTALSAALNTQFLFQIGIFTAVPMILGFILEQGFLKAIVSFVTMQFQLCTVFFTFSLGTRTHYFGRTILHGGARYQATGRGFVVRHIKFSENYRLYSRSHFVKGLEVALLLIVYLAYGYNEGGALSYILLSISSWFMALSWLFAPYLFNPSGFEWQKVVEDFRDWTNWLLYRGGIGVKGEESWEAWWEEELAHIRSLGSRIAETILSLRFFIFQYGIVYKLNVKGTSTSLTVYGLSWVVLAVLIILFKVFTFSQKISVNFQLLLRFIQGISLLVALAGLVVAVILTELSLPDIFASMLAFIPTGWGILSIAAAWKPVMKRFGLWKSVRSIARLYDAGMGMLIFVPIAFFSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNNHNTGI*
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