Glyma20g38751 - SoyBase

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Report for Sequence Feature Glyma20g38751

Feature Type:	gene_model
Chromosome:	Gm20
Start:	46272877
stop:	46276630
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g38751

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34860	AT	Annotation by Michelle Graham. TAIR10: DnaJ/Hsp40 cysteine-rich domain superfamily protein \| chr2:14708380-14709804 FORWARD LENGTH=186	SoyBase	E_val: 2.00E-51	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009561	GO-bp	Annotation by Michelle Graham. GO Biological Process: megagametogenesis	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
UniRef100_G7IF33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ-like zinc-finger protein n=1 Tax=Medicago truncatula RepID=G7IF33_MEDTR	SoyBase	E_val: 4.00E-49	ISS
UniRef100_I1NJ86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NJ86_SOYBN	SoyBase	E_val: 5.00E-70	ISS

Expression Patterns of Glyma20g38751

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g38751 not represented in the dataset	Glyma20g38751 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g38751

Paralog	Evidence	Comments
Glyma10g44020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g38751 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g243800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g38751

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g38751

Limit To All Plant Sequences

>Glyma20g38751.2   sequence type=transcript   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGATTAAGGTTGGGTTGGTTTAGGTTGCTTGATAAAAAAACAACAAACCAAATCCAACTCTGCTAGTTATGTTTCATTGAGCTGGGTCTTAAATTAGACTAATTTCAACCTAATCGTATTCTCGGTTCGGTCTTTGTTTCTTTATACTAGTAAGTAGCAAGTGAAGTTGAAGTTGCAGTTGCGGGAAAGACGCAGGTGGTGAAATCCTGTCACCAAAATGAGAGCTCTGCTTCTGCTCAAAGGAACTCAGTGTAAAAGTTTCCAGGCGTAATTGTCTCTCGTGTTTCTGTTCAACTCTAGTTTTGATTAGTGATTGCGCCATGCCTATTTTTGTACCAAAGGCATCCGCTGTGAATGGAATGATGGATAAACCTTTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTTTTCTGTCCTGTTTGTTTTGGAACTGGTTTGCCAAATAATAAAGGTCTCCTAAGGAGGCCTGAGGCACGGAAATTGCTTGATAAAATGTACAATGGACGGCTACTTCCAAACTCTTAGAAGCCGTAAATCTGAGCAAAATTGAGGCTTGCTAATGCTGCTTTTTGGCACAATGATTGGGATGGTCCTCACCAATTAACATAGCCAGTGACTTCATTGGTAATCAACTTCTAGCACAGATCATGTGGAGGACTTTTTGCTTATATTTTTGGTCTGGCTTCATTCCAGAACTCTAGCCATTGCCTTAGTTATACACCTAATGACTTTCATGGTTCTGTATGAAAAAGGTCCATTGTTCGATGCCTACAATCCTCATATTCATGCAGACCCAAATGACTTACAAAATCCCATGTATAATGTAAACATTGAGCAAATACTTCCAGCAAGAGTAAATCTGTAGATGTAAATTTTCATGCAACTCGTGTACACCTAAGAGGTATTAAATCCTTAAAGATGTGCAATAGTTTACAAAATTATAAAGTATGTCATGAATAATATTTTGCTGTTTACTCTGGCTTGTGACAATGGCATTTAAGTGAGCTCGAAATTGGAGTTGTCTTCTATACTTTTAATTCTCACTGTAAACTTGAAAAATTATAATTACACAAATAAAGTGGG

>Glyma20g38751.3   sequence type=transcript   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGATTAAGGTTGGGTTGGTTTAGGTTGCTTGATAAAAAAACAACAAACCAAATCCAACTCTGCTAGTTATGTTTCATTGAGCTGGGTCTTAAATTAGACTAATTTCAACCTAATCGTATTCTCGGTTCGGTCTTTGTTTCTTTATACTAGAAAGACGCAGGTGGTGAAATCCTGTCACCAAAATGAGAGCTCTGCTTCTGCTCAAAGGAACTCAGTGTAAAAGTTTCCAGGCGTAATTGTCTCTCGTGTTTCTGTTCAACTCTAGTTTTGATTAGTGATTGCGCCATGCCTATTTTTGTACCAAAGGCATCCGCTGTGAATGGAATGATGGATAAACCTTTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTTTTCTGTCCTGTTTGTTTTGGAACTGGTTTGCCAAATAATAAAGGTCTCCTAAGGAGGCCTGAGGCACGGAAATTGCTTGATAAAATGTACAATGGACGGCTACTTCCAAACTCTTAGAAGCCGTAAATCTGAGCAAAATTGAGGCTTGCTAATGCTGCTTTTTGGCACAATGATTGGGATGGTCCTCACCAATTAACATAGCCAGTGACTTCATTGGTAATCAACTTCTAGCACAGATCATGTGGAGGACTTTTTGCTTATATTTTTGGTCTGGCTTCATTCCAGAACTCTAGCCATTGCCTTAGTTATACACCTAATGACTTTCATGGTTCTGTATGAAAAAGGTCCATTGTTCGATGCCTACAATCCTCATATTCATGCAGACCCAAATGACTTACAAAATCCCATGTATAATGTAAACATTGAGCAAATACTTCCAGCAAGAGTAAATCTGTAGATGTAAATTTTCATGCAACTCGTGTACACCTAAGAGGTATTAAATCCTTAAAGATGTGCAATAGTTTACAAAATTATAAAGTATGTCATGAATAATATTTTGCTGTTTACTCTGGCTTGTGACAATGGCATTTAAGTGAGCTCGAAATTGG

Coding sequences of Glyma20g38751

Limit To All Plant Sequences

>Glyma20g38751.1   sequence type=CDS   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTATTTTTGTACCAAAGGCATCCGCTGTGAATGGAATGATGGATAAACCTTTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTTTTCTGTCCTGTTTGTTTTGGAACTGGTTTGCCAAATAATAAAGGTCTCCTAAGGAGGCCTGAGGCACGGAAATTGCTTGATAAAATGTACAATGGACGGCTACTTCCAAACTCTTAG

>Glyma20g38751.2   sequence type=CDS   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTATTTTTGTACCAAAGGCATCCGCTGTGAATGGAATGATGGATAAACCTTTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTTTTCTGTCCTGTTTGTTTTGGAACTGGTTTGCCAAATAATAAAGGTCTCCTAAGGAGGCCTGAGGCACGGAAATTGCTTGATAAAATGTACAATGGACGGCTACTTCCAAACTCTTAG

>Glyma20g38751.3   sequence type=CDS   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTATTTTTGTACCAAAGGCATCCGCTGTGAATGGAATGATGGATAAACCTTTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAGCTTTTCTGTCCTGTTTGTTTTGGAACTGGTTTGCCAAATAATAAAGGTCTCCTAAGGAGGCCTGAGGCACGGAAATTGCTTGATAAAATGTACAATGGACGGCTACTTCCAAACTCTTAG

Predicted protein sequences of Glyma20g38751

Limit To All Plant Sequences

>Glyma20g38751.1   sequence type=predicted peptide   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIFVPKASAVNGMMDKPLCRNCLGSGAVLYDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLFCPVCFGTGLPNNKGLLRRPEARKLLDKMYNGRLLPNS*

>Glyma20g38751.2   sequence type=predicted peptide   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIFVPKASAVNGMMDKPLCRNCLGSGAVLYDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLFCPVCFGTGLPNNKGLLRRPEARKLLDKMYNGRLLPNS*

>Glyma20g38751.3   sequence type=predicted peptide   gene model=Glyma20g38751   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIFVPKASAVNGMMDKPLCRNCLGSGAVLYDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLFCPVCFGTGLPNNKGLLRRPEARKLLDKMYNGRLLPNS*

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