SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50480 | AT | Annotation by Michelle Graham. TAIR10: 10-formyltetrahydrofolate synthetase | chr1:18702064-18704687 FORWARD LENGTH=634 | SoyBase | E_val: 0 | ISS |
| GO:0009396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004329 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: formate-tetrahydrofolate ligase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR24508 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24508:SF8 | Panther | JGI | ISS | ||
| PF01268 | PFAM | Formate--tetrahydrofolate ligase | JGI | ISS | |
| UniRef100_I1NJ85 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NJ85_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P28723 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formate--tetrahydrofolate ligase n=1 Tax=Spinacia oleracea RepID=FTHS_SPIOL | SoyBase | E_val: 0 | ISS |
|
Glyma20g38740 not represented in the dataset |
Glyma20g38740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g44010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g243700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38740.1 sequence type=CDS gene model=Glyma20g38740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCCTCAACTACAGTGAGGAAGTTGCAGGTGGTGTCCCCTGTTCCTGCGGACATAGACATTGCAAACTCCGTTGAACCCGTTCATATCTCCCAGATTGCCAAAGACCTCAACCTTAGTCCCAATCACTATGACCTTTACGGTAAATACAAGGCTAAGGTTTTGTTGTCGGTTCTTGATGAGCTTCAAGGATCAGAAGATGGGTATTATGTTGTGGTCGGAGGCATTACTCCGACTCCTCTCGGGGAAGGCAAATCTACTACTACAGTGGGGCTCTGTCAAGCTTTAGGTGCTTTTCTTGATAAAAAGGTAGTCACCTGCCTTCGTCAACCATCGCAAGGACCTACTTTTGGAATTAAAGGAGGTGCAGCTGGTGGTGGCTATAGCCAAGTTATTCCCATGGATGAATTCAATCTTCATCTAACAGGAGATATTCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGAATTTTCCATGAGTCAACACAGTCAGATAAGGCTCTTTTTAACCGGTTGTGCCCTCCAAATAAAGAAGGGAAAAGGAGCTTTAGTGATGTCATGTTCAGGCGTCTTACGAAGCTTGGCATTTCAAAGACCAATCCAGATGATCTTACACCAGAAGAAGTAAATAAATTTGCTAGGCTTGATATTGACCCAAATTCTATCACATGGAGGAGAGTAATGGACATCAATGATCGATTCTTGAGAAAAATTGCTATTGGCCAGGGACCTGACGAGAAAGGAATGGTGAGAGAAACAGGCTTTGATATTTCAGTTGCTAGTGAGATTATGGCTGTTTTGGCACTGACAACATCCTTAGCTGATATGCGAGAGAGGCTTGGGAAAATGGTTATTGGGAATAGCAAGAGTGGTGACCCTGTAACTGCTGATGATCTAGGTGTTGGAGGTGCTTTAACAGTTTTAATGAAGGATGCCATTCACCCTACCCTTATGCAGACTCTGGAAGGAACTCCTGTTCTTGTTCATGCAGGTCCATTTGCAAATATTGCTCATGGGAATTCTTCTATTGTGGCTGATAAGATTGCACTAAAGTTAGTTGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGAGCTGAAAAGTTTATGAACATTAAGTGTCGTTATAGTGGTTTGACACCTCAATGTGCGATTATTGTGGCAACTATCAGAGCACTAAAAATGCATGGTGGAGGGCCTGCAGTTGTTGCTGGAAGACCTCTTGACCATGCATATTTGACTGAAAATGTTGCCCTGGTTGAGGCTGGTTGTGTGAACATGGCACGACATATATCAAATACAAAATCTTATGGTGTAAATGTTGTAGTTGCCATCAACAAGTTTTCAACTGACACTGAAGCCGAGCTAAATGCAGTTCGAAGTGCTGCATTAGCTGCTGGAGCTTATGATGCTGTAATTTGTACCCATCATGCGAATGGTGGCAAAGGAGCCGTTGACCTGGGCATTGCAGTTCAAAAAGCCTGCGAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTGTTGACCTGAGTATAAAAGAGAAAATAGAGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGGCTGAGAAGCAGATTGAGATGTATAGCAAGCAAGGATTTTCAGGTCTTCCAATATGCATGGCTAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAAAGGGAGCTCCAAGTGGGTTTGTCTTACCCATAAGGGATGTAAGAGCTAGTATAGGCGCTGGATTTATTTATCCTTTAGTTGGAACAATGAGTACGATGCCAGGGCTTCCTACAAGGCCATGCTTCTATGACATTGATCTGGATACAACAACTGGAAAAGTCATTGGTCTCTCTTAA
>Glyma20g38740.1 sequence type=predicted peptide gene model=Glyma20g38740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSTTVRKLQVVSPVPADIDIANSVEPVHISQIAKDLNLSPNHYDLYGKYKAKVLLSVLDELQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLTKLGISKTNPDDLTPEEVNKFARLDIDPNSITWRRVMDINDRFLRKIAIGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGDPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAIIVATIRALKMHGGGPAVVAGRPLDHAYLTENVALVEAGCVNMARHISNTKSYGVNVVVAINKFSTDTEAELNAVRSAALAAGAYDAVICTHHANGGKGAVDLGIAVQKACENVTQPLKFLYPVDLSIKEKIEAIAKSYGASGVEYSEQAEKQIEMYSKQGFSGLPICMAKTQYSFSDNAAAKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTTTGKVIGLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
