SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45290 | AT | Annotation by Michelle Graham. TAIR10: Transketolase | chr2:18672737-18675589 FORWARD LENGTH=741 | SoyBase | E_val: 0 | ISS |
| 2.2.1.1 | EC | Transketolase | JGI | ISS | |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transketolase activity | SoyBase | N/A | ISS |
| K00615 | KO | transketolase [EC:2.2.1.1] | JGI | ISS | |
| KOG0523 | KOG | Transketolase | JGI | ISS | |
| PTHR11624 | Panther | DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11624:SF1 | Panther | 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE | JGI | ISS | |
| PF00456 | PFAM | Transketolase, thiamine diphosphate binding domain | JGI | ISS | |
| PF02779 | PFAM | Transketolase, pyrimidine binding domain | JGI | ISS | |
| PF02780 | PFAM | Transketolase, C-terminal domain | JGI | ISS | |
| UniRef100_G7IF28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transketolase n=1 Tax=Medicago truncatula RepID=G7IF28_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00019D348F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00019D348F related cluster n=1 Tax=unknown RepID=UPI00019D348F | SoyBase | E_val: 0 | ISS |
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Glyma20g38720 not represented in the dataset |
Glyma20g38720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g243500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38720.1 sequence type=CDS gene model=Glyma20g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCACATCCTCTCTGCATCTATCTCAGGCCCTTCTGGCACGTGCTGTGTACCTTCATGGCTCTTCTTCTGACCGTGTCTCACTCTCCTTCCCATCATTCTCTGGCCTCAAGTCACATTCTCCATGCAAAGCAGCAGCCACGTCCTCACGTAGAAGGGGTGCTTGCGCTTCCACCAGCGTTGTTCGAGCCGCTGCGGTTGAGACACTGGACCAGACCACTGAGGTTTCTCTGGTGGAGAAATCCGTCAACACCATTCGGTTTTTGGCCATTGATGCTGTTGAGAAGGCCAACTCTGGTCACCCTGGTCTCCCCATGGGGTGTGCTCCAATGGGTCACATTCTCTACGATGAGGTCATGAGGTACAATCCCAAGAATCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGGAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGCATGCTCACTTGCCGGTCACTGGGGTCTAGGGAAGCTTATTGCTTTATATGATGACAACCACATTTCCATTGATGGGGACACTGAGATTGCATTCACTGAGAATGTTGATCAACGTTTTGAGGCACTTGGGTGGCATGTAATTTGGGTGAAGAATGGAAATACTGGATATGATGAAATTCGTGCAGCCATTAAGGAAGCAAAGGCTGTCAAAGACAAACCCACTATGATCAAGGTAACCACTACCATTGGATTTGGTTCTCCAAACAAGGCTAACTCCTACAGTGTTCATGGAAGTGCATTAGGTACTAAAGAAGTGGATGCTACAAGGAAGAATCTTGGATGGCCATACGAGCCTTTCCATGTGCCAGAAGATGTTAAAAAGCATTGGAGTCGCCATACCCCTGAGGGTGCTAAACTTGAAGCTGAGTGGAATGCCAAGTTTGCAGAATATGAGAAGAAATACAGTGAGGAAGCTGCAGAGCTGAAGGCTATTATTACTGGTGAATTACCAGCTGGTTGGGAGAAAGCACTTCCGACATACACTCCAGAAAGCCCTGCTGATGCTACAAGAAATCTGTCTCAGCAAAATCTAAATGCCCTTGTTAAGGTTCTTCCTGGTCTACTTGGTGGCAGTGCAGATCTTGCCTCTTCCAACATGACCTTGTTGAAATCATACGGAGATTTCCAAAAGAATACTCCCGAAGAGCGCAATGTTAGATTTGGTGTTAGAGAACATGGAATGGGAGCAATCTGTAATGGTATTGCTCTTCATAGCCCCGGATTCATTCCATACTGTGCAACTTTCTTTGTCTTCACTGACTACATGAGAGCTGCCATAAGGATTTCTGCACTGTGTGAAGCTGGAGTTATTTATGTGATGACTCATGATTCGATTGGACTTGGAGAGGATGGACCAACTCATCAGCCAATAGAGCACTTGGCAAGCTTCAGGGCAATGCCAAACACTTTGATGCTTCGTCCAGCTGATGGTAATGAAACTGCTGGATCATACAAAGTTGCTGTGGTTAACAGGAAGAGACCCTCAATTCTTGCACTTTCTAGGCAAAAGTTGACCCAACTTCCAGGAACTTCTATTGAGGGAGTTGAAAAGGGTGGCTACATTATTTCAGACAACTCGTCAGGTAACAAGCCTGATGTTATTTTGATTGGAACTGGTTCTGAGTTGGAAATTGCTGCTGCTGCTGCTGAGGATCTAAGGAAGGAAGGAAAAGCTGTTAGAGTTGTTTCTTTTGTTAGCTGGGAACTTTTTGATGAGCAGTCAGATGAATACAAAGAGAGTGTTCTCCCTGCTTCGGTAACAGTTAGAGTTAGCATTGAGGCAGGATCAACATTTGGTTGGCAAAAGATTGTTGGAAGCCAAGGAAAGGCCATAGGCATTGATCGATTTGGAGCAAGTGCTCCAGCAGGAAAAATATACAAGGAGTTTGGTATCACCAAGGAAGCTGTTATTGCTGCTGCCAAAGAACTTTCGTAG
>Glyma20g38720.1 sequence type=predicted peptide gene model=Glyma20g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTSSLHLSQALLARAVYLHGSSSDRVSLSFPSFSGLKSHSPCKAAATSSRRRGACASTSVVRAAAVETLDQTTEVSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPTWFNRDRFILSAGHGCMLQYALLHLAGYDSVLEEDLKEFRQWGSRTPGHPENFETVGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGDGCQMEGISNEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTENVDQRFEALGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGSALGTKEVDATRKNLGWPYEPFHVPEDVKKHWSRHTPEGAKLEAEWNAKFAEYEKKYSEEAAELKAIITGELPAGWEKALPTYTPESPADATRNLSQQNLNALVKVLPGLLGGSADLASSNMTLLKSYGDFQKNTPEERNVRFGVREHGMGAICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNTLMLRPADGNETAGSYKVAVVNRKRPSILALSRQKLTQLPGTSIEGVEKGGYIISDNSSGNKPDVILIGTGSELEIAAAAAEDLRKEGKAVRVVSFVSWELFDEQSDEYKESVLPASVTVRVSIEAGSTFGWQKIVGSQGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAKELS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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