SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44520 | AT | Annotation by Michelle Graham. TAIR10: cytochrome c oxidase 10 | chr2:18379660-18381731 FORWARD LENGTH=431 | SoyBase | E_val: 2.00E-175 | ISS |
| 2.5.1.- | EC | transferases | JGI | ISS | |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0048034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme o biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0031966 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane | SoyBase | N/A | ISS |
| GO:0004659 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity | SoyBase | N/A | ISS |
| GO:0008495 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protoheme IX farnesyltransferase activity | SoyBase | N/A | ISS |
| K02257 | KO | protoheme IX farnesyltransferase [EC:2.5.1.-] | JGI | ISS | |
| KOG1380 | KOG | Heme A farnesyltransferase | JGI | ISS | |
| PTHR11048 | Panther | PRENYLTRANSFERASES | JGI | ISS | |
| PF01040 | PFAM | UbiA prenyltransferase family | JGI | ISS | |
| UniRef100_G7IF26 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protoheme IX farnesyltransferase n=1 Tax=Medicago truncatula RepID=G7IF26_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NJ83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NJ83_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g38710 not represented in the dataset |
Glyma20g38710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g243400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38710.1 sequence type=CDS gene model=Glyma20g38710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTTGAGGAGGAGGGGTTCTGTGACCTCCTTCTATTCCAAATTCATCGATTCTCACAATCTTAATTGTGGGCGTTCCTCTTCGAATCCCCATCGCGTCGCTGCTTCTGCAACTTCATTCGATATCTCTTCCGCTTCTGCGTCTAAAGCTACGACCGACTTCGTGTCGTTGACCCGCCACTATGGAAGGTGCTATTGGGAGCTCTCCAAAGCTCGTCTCAGCATGCTTGTGGTTGCAACATCTGGGACTGGGTTTGTCTTGGGGAGTGGTAGTGCTGTTGATCTTTCGGCACTTTCTTGCACTTGCTTGGGTACCATGATGGTTGCTGCATCTGCTAACTCTTTGAATCAGGTGTTTGAGATCAATAATGATGCTAAAATGAAGAGAACAAGTCGCAGGCCACTACCCTCAGGACGCATCACAATACCTCATGCAGTTGGCTGGGCATCCTCTGTTGGATTAGCTGGTACGGCTCTACTAGCTACGCAGACCAATATGTTAGCTGCTGGGCTTGCTGCTTCCAACCTAATTCTGTATGCATTTGTATATACACCCTTGAAGCAGATTCATCCCATAAATACATGGGTGGGAGCTGTTGTCGGTGCTATTCCACCACTTTTGGGATGGGCTGCAGCTTCTAATGATATTTCACTAAATGGAATGATTCTTCCAGCTGCTTTGTATTTTTGGCAAATACCACATTTTATGGCCCTAGCCTATTTGTGTCGTGATGACTATGCTGCTGGAGGGTTTAAGATGTACTCTCTTGCTGATGCATCTGGGCATAGAACAGCATTGGTGGCTTTAAGGAACTCTATATATCTAATCCCTTTGGGGTTCTTGGCTTATGATTGGGGTTTGACTTCTGGATGGTTTTGTCTTGAGTCCGCTGCACTTACACTTGCAATAAGCGCTGCAGCATTTTCATTCTATAGAAACCGTACCAAAGAAAAGGCAAGGAGAATGTTCCATGCCAGTCTTCTTTACCTCCCTGTGTTTATGTCTGGGCTTTTGATTCACCGTCGTTCTGAAAACGAACAATTCTTAGAAGACAAAGCAAAGGGTTTTGTGAAATCTGCATCCTCTACGGAGTCTTCAGAGTTGGATGATGATAACGGCGATCAAAATATCAAGGCCAGGCGTCCCTATCGGACTGAAGCGCGTCCTCCCGTATCGTATGCCTCTGTTGCACCTTTTCCCTTTTTGCCTGCTCCATCATATAACTTCCCTTGA
>Glyma20g38710.1 sequence type=predicted peptide gene model=Glyma20g38710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLRRRGSVTSFYSKFIDSHNLNCGRSSSNPHRVAASATSFDISSASASKATTDFVSLTRHYGRCYWELSKARLSMLVVATSGTGFVLGSGSAVDLSALSCTCLGTMMVAASANSLNQVFEINNDAKMKRTSRRPLPSGRITIPHAVGWASSVGLAGTALLATQTNMLAAGLAASNLILYAFVYTPLKQIHPINTWVGAVVGAIPPLLGWAAASNDISLNGMILPAALYFWQIPHFMALAYLCRDDYAAGGFKMYSLADASGHRTALVALRNSIYLIPLGFLAYDWGLTSGWFCLESAALTLAISAAAFSFYRNRTKEKARRMFHASLLYLPVFMSGLLIHRRSENEQFLEDKAKGFVKSASSTESSELDDDNGDQNIKARRPYRTEARPPVSYASVAPFPFLPAPSYNFP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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