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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55070 | AT | Annotation by Michelle Graham. TAIR10: LisH/CRA/RING-U-box domains-containing protein | chr3:20408377-20410887 FORWARD LENGTH=418 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0396 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12170 | Panther | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED | JGI | ISS | |
| PTHR12170:SF2 | Panther | gb def: hypothetical zf-c3hc4 zinc finger protein [schizosaccharomyces pombe] | JGI | ISS | |
| UniRef100_G7IF21 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Macrophage erythroblast attacher n=1 Tax=Medicago truncatula RepID=G7IF21_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFF6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g38660 not represented in the dataset |
Glyma20g38660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g242800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38660.2 sequence type=transcript gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTGTTTGGTAGAAGCATCGTCTATCCAATCCATTTAGCAATCTGAGATTCCATTTTCTCCGTTGTTCCCAATGGAAATGGATTCCCTTCCCAACGGCAACAACACCGCCGGAACCCCGATCTCCGCCACCGCCACCGCCACCGCCAACCCCGCGCCGCCTCAGTCGTCGAACCTTCCTCAACTGACGGAGTCTCTGAAGCTGGAGCACCAGTTCCTCAGGGTCCCTTTCGAGCACTACAAGAAAACCCTCCGTGCCAACCACCGCGCCGTCGAGAAGGAGATGTCCGCCGTCATCTCCGGCGTCACCGAAGCCGCCGCCGCCGACCTGTCCCCCGACGACGCCGTCAACCACCTTAACTCCCTTGTCTGCCGCTTGCAAGGGCTCAAGAGAAAGGGTTTCTATTCGTTCGATTTTTTATTTGCAGTGCTCAGTTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCGCAGAAGTGTAGGGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAATATGTCAGAATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTTTGCAAAATAAGGATGTTGCACCCGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGAGCAAAATGGAATTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCATATTGTTACGAGGATGATTGCACAAAAGAGGACCCCTTATCACAGGAGGCTTTCCGCACACTAGCCATGCCATTACCATATTCAAAGCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCATAAATCTACATACTTGCCTTGGCTTCAATCTTCCATGGCTGTCTGATTGTAATGTTTTGGGAAAATACTTTCATGGGCTTCCCGTTGTTACGTCCATTCTTTTACCTGTGTTCCGGTGCTAACTTACTTGTACATATGTAAAGATGTTTTCAATTGTCACTGGGATATGACGTAAACATGTGCATACATTGATTTGTATTTTACGTGTGTTTGGTTTTCCGTGAAAATTGATTTTAGATATATTTTTGAATGTTTCTTTTCATGTTAGAGAAAAATTCATAATTAATTATGAATTGAAACAACCTAACTTTTGTATTG >Glyma20g38660.3 sequence type=transcript gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTGTTTGGTAGAAGCATCGTCTATCCAATCCATTTAGCAATCTGAGATTCCATTTTCTCCGTTGTTCCCAATGGAAATGGATTCCCTTCCCAACGGCAACAACACCGCCGGAACCCCGATCTCCGCCACCGCCACCGCCACCGCCAACCCCGCGCCGCCTCAGTCGTCGAACCTTCCTCAACTGACGGAGTCTCTGAAGCTGGAGCACCAGTTCCTCAGGGTCCCTTTCGAGCACTACAAGAAAACCCTCCGTGCCAACCACCGCGCCGTCGAGAAGGAGATGTCCGCCGTCATCTCCGGCGTCACCGAAGCCGCCGCCGCCGACCTGTCCCCCGACGACGCCGTCAACCACCTTAACTCCCTTGTCTGCCGCTTGCAAGGGCTCAAGAGAAAGGGTTTCTATTCGTTCGATTTTTTATTTGCAGTGCTCAGTTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCGCAGAAGTGTAGGGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAATATGTCAGAATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTTTGCAAAATAAGGATGTTGCACCCGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGAGCAAAATGGAATTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCGTATCCTTTAACAACTTAAACTGTAGATTATCATCTAGAAACTTTTTTTTTTTCTAAAATGTTTACATACCTATAATTGAAACACCCCTTCCACCCT
>Glyma20g38660.1 sequence type=CDS gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGATTCCCTTCCCAACGGCAACAACACCGCCGGAACCCCGATCTCCGCCACCGCCACCGCCACCGCCAACCCCGCGCCGCCTCAGTCGTCGAACCTTCCTCAACTGACGGAGTCTCTGAAGCTGGAGCACCAGTTCCTCAGGGTCCCTTTCGAGCACTACAAGAAAACCCTCCGTGCCAACCACCGCGCCGTCGAGAAGGAGATGTCCGCCGTCATCTCCGGCGTCACCGAAGCCGCCGCCGCCGACCTGTCCCCCGACGACGCCGTCAACCACCTTAACTCCCTTGTCTGCCGCTTGCAAGGGCTCAAGAGAAAGTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCGCAGAAGTGTAGGGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAATATGTCAGAATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTTTGCAAAATAAGGATGTTGCACCCGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGAGCAAAATGGAATTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCATATTGTTACGAGGATGATTGCACAAAAGAGGACCCCTTATCACAGGAGGCTTTCCGCACACTAGCCATGCCATTACCATATTCAAAGCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCATAA >Glyma20g38660.2 sequence type=CDS gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGATTCCCTTCCCAACGGCAACAACACCGCCGGAACCCCGATCTCCGCCACCGCCACCGCCACCGCCAACCCCGCGCCGCCTCAGTCGTCGAACCTTCCTCAACTGACGGAGTCTCTGAAGCTGGAGCACCAGTTCCTCAGGGTCCCTTTCGAGCACTACAAGAAAACCCTCCGTGCCAACCACCGCGCCGTCGAGAAGGAGATGTCCGCCGTCATCTCCGGCGTCACCGAAGCCGCCGCCGCCGACCTGTCCCCCGACGACGCCGTCAACCACCTTAACTCCCTTGTCTGCCGCTTGCAAGGGCTCAAGAGAAAGGGTTTCTATTCGTTCGATTTTTTATTTGCAGTGCTCAGTTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCGCAGAAGTGTAGGGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAATATGTCAGAATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTTTGCAAAATAAGGATGTTGCACCCGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGAGCAAAATGGAATTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCATATTGTTACGAGGATGATTGCACAAAAGAGGACCCCTTATCACAGGAGGCTTTCCGCACACTAGCCATGCCATTACCATATTCAAAGCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGGCTCTTGAAGAGATGGCGAAGAAGAATAATGGTAGAATCATCTGCCCAAGGACGGGTTTAGTTTGCAGCTACACAGAACTGGTCAAGGCATATATTTCATAA >Glyma20g38660.3 sequence type=CDS gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGATTCCCTTCCCAACGGCAACAACACCGCCGGAACCCCGATCTCCGCCACCGCCACCGCCACCGCCAACCCCGCGCCGCCTCAGTCGTCGAACCTTCCTCAACTGACGGAGTCTCTGAAGCTGGAGCACCAGTTCCTCAGGGTCCCTTTCGAGCACTACAAGAAAACCCTCCGTGCCAACCACCGCGCCGTCGAGAAGGAGATGTCCGCCGTCATCTCCGGCGTCACCGAAGCCGCCGCCGCCGACCTGTCCCCCGACGACGCCGTCAACCACCTTAACTCCCTTGTCTGCCGCTTGCAAGGGCTCAAGAGAAAGGGTTTCTATTCGTTCGATTTTTTATTTGCAGTGCTCAGTTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCGCAGAAGTGTAGGGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAATATGTCAGAATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGATGCTTTGCAAAATAAGGATGTTGCACCCGCCCTAGCATGGTGTGCTGATAACAAATCAAGGCTGAAGAAGTCTAAGAGCAAAATGGAATTCCAGTTGAGACTTCAAGAGTTCATAGAATTAGTAAGAGCTGAGAACAATTTGAGAGCTATCACATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTACAGCGAGTCATTGCTACACTAGCTTTTAAAAGGGATACTGAATGTAGCACATACAAGGTTTTATTTGAAGCTAAGCAATGGGATTATCTAGTGGACCAATTCAAACAGGAGTTCTGCAAGTTATATGGCATGACTTTAGAGCCCTTGCTCAATATCTATCTGCAAGCTGGCCTTTCTGCTCTCAAGACACCGTATCCTTTAACAACTTAA
>Glyma20g38660.1 sequence type=predicted peptide gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMDSLPNGNNTAGTPISATATATANPAPPQSSNLPQLTESLKLEHQFLRVPFEHYKKTLRANHRAVEKEMSAVISGVTEAAAADLSPDDAVNHLNSLVCRLQGLKRKLEEGSRAEHLQAQKCRVRLDHLESADAENMSEWNNTRMKRILVDYMLRMSYYDTAVKLAKSSNLQDLVDIDVFQEAKKVIDALQNKDVAPALAWCADNKSRLKKSKSKMEFQLRLQEFIELVRAENNLRAITYARKYLAPWGATHMKELQRVIATLAFKRDTECSTYKVLFEAKQWDYLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALKTPYCYEDDCTKEDPLSQEAFRTLAMPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGRIICPRTGLVCSYTELVKAYIS* >Glyma20g38660.2 sequence type=predicted peptide gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMDSLPNGNNTAGTPISATATATANPAPPQSSNLPQLTESLKLEHQFLRVPFEHYKKTLRANHRAVEKEMSAVISGVTEAAAADLSPDDAVNHLNSLVCRLQGLKRKGFYSFDFLFAVLSLEEGSRAEHLQAQKCRVRLDHLESADAENMSEWNNTRMKRILVDYMLRMSYYDTAVKLAKSSNLQDLVDIDVFQEAKKVIDALQNKDVAPALAWCADNKSRLKKSKSKMEFQLRLQEFIELVRAENNLRAITYARKYLAPWGATHMKELQRVIATLAFKRDTECSTYKVLFEAKQWDYLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALKTPYCYEDDCTKEDPLSQEAFRTLAMPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGRIICPRTGLVCSYTELVKAYIS* >Glyma20g38660.3 sequence type=predicted peptide gene model=Glyma20g38660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMDSLPNGNNTAGTPISATATATANPAPPQSSNLPQLTESLKLEHQFLRVPFEHYKKTLRANHRAVEKEMSAVISGVTEAAAADLSPDDAVNHLNSLVCRLQGLKRKGFYSFDFLFAVLSLEEGSRAEHLQAQKCRVRLDHLESADAENMSEWNNTRMKRILVDYMLRMSYYDTAVKLAKSSNLQDLVDIDVFQEAKKVIDALQNKDVAPALAWCADNKSRLKKSKSKMEFQLRLQEFIELVRAENNLRAITYARKYLAPWGATHMKELQRVIATLAFKRDTECSTYKVLFEAKQWDYLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALKTPYPLTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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