Glyma20g38560 - SoyBase

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Report for Sequence Feature Glyma20g38560

Feature Type:	gene_model
Chromosome:	Gm20
Start:	46127061
stop:	46129533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g38560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55120	AT	Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein \| chr3:20430248-20431415 REVERSE LENGTH=246	SoyBase	E_val: 4.00E-71	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0042406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular lyase activity	SoyBase	N/A	ISS
GO:0045430	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chalcone isomerase activity	SoyBase	N/A	ISS
PF02431	PFAM	Chalcone-flavanone isomerase	JGI		ISS
UniRef100_Q93XE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone--flavonone isomerase 1A n=1 Tax=Glycine max RepID=CFI1A_SOYBN	SoyBase	E_val: 2.00E-154	ISS
UniRef100_Q93XE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Chalcone--flavonone isomerase 1A n=1 Tax=Glycine max RepID=CFI1A_SOYBN	SoyBase	E_val: 2.00E-154	ISS

Expression Patterns of Glyma20g38560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g38560 not represented in the dataset	Glyma20g38560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g38560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g241500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g38560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g38560

Limit To All Plant Sequences

>Glyma20g38560.2   sequence type=transcript   gene model=Glyma20g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTAAGTGAAGAGGATCTGTGCTCTCTAGATACATGCTATATGTATAGAAGATGTATGAAGTGTCTATATAAGTGATTGTGGTCTCATTCATTTGCAACAACACAAGCTGGGGTGTTAAATAGAAAAGAGGAGTTTGAGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGGTCAGTTGCTTGTTTTAGTTAATGAAATTAATATGTTTGCCTTGTCCTGTTCCACTAATATAAATTAATGTGCGTGCGTGTGTGTCTTACAGCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAACATGCTGTTTCCCCTGACTTAAAACGCAGTTTGGCTTCTCGATTGCCTGCGGTATTGAGCCACGGCATTATAGTCTGAGAAATGAGAAGGATCAACTTTACCTTTTTCAAATATTCTTGTTTTTCTCCTTTCTTTCTTGTCGCTTGTCATGTATTTCTACTGTTTTATTAAATAATAAAATTGAGTTCTGTTAGAGTTGGTGAAACGAACATAATTTTTTCTTCTAAATTGATGAATGAGAATAAAATTTAAATTAGTATTCAAAAAATATATATATAAGGTATTTTATAATTTTTGAATGTAAAGTTGTAATTGAAGTCATAAATTTGTTTAGACTTTGTATTCAAAAGTCCTAGAGTATCTGATATTTTTTTGGTACCAATCTAAATTTTATCT

Coding sequences of Glyma20g38560

Limit To All Plant Sequences

>Glyma20g38560.1   sequence type=CDS   gene model=Glyma20g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGCTTAGTTTCTCTGAAGATGCAACAATACCAGAAAAGGAGGCTGCAGTGATAGAGAACAAGGCTGTATCAGCGGCGGTCTTGGAGACCATGATTGGTGAACATGCTGTTTCCCCTGACTTAAAACGCAGTTTGGCTTCTCGATTGCCTGCGGTATTGAGCCACGGCATTATAGTCTGA

>Glyma20g38560.2   sequence type=CDS   gene model=Glyma20g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAGGAGTATACTTGGAGGATAAGGCGGTGCCATCACTCGCCGCTAAGTGGAAGGGTAAAACTTCAGAGGAGTTAGTTCACACCCTCCACTTCTACAGGGATATCATTTCAGGGCCGTTTGAAAAGCTAATTAGAGGGTCGAAGATTCTGCCATTGGCTGGCGCTGAATACTCAAAGAAGGTGATGGAAAACTGCGTGGCACACATGAAGTCTGTTGGGACTTACGGTGATGCTGAAGCCGCAGCCATTGAAAAGTTTGCTGAAGCCTTCAAGAATGTGAATTTTGCACCTGGTGCCTCTGTTTTCTACAGACAATCACCTGATGGAATCTTGGGGGTCAGTTGCTTGTTTTAG

Predicted protein sequences of Glyma20g38560

Limit To All Plant Sequences

>Glyma20g38560.1   sequence type=predicted peptide   gene model=Glyma20g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATISAVQVEFLEFPAVVTSPASGKTYFLGGAGERGLTIEGKFIKFTGIGVYLEDKAVPSLAAKWKGKTSEELVHTLHFYRDIISGPFEKLIRGSKILPLAGAEYSKKVMENCVAHMKSVGTYGDAEAAAIEKFAEAFKNVNFAPGASVFYRQSPDGILGLSFSEDATIPEKEAAVIENKAVSAAVLETMIGEHAVSPDLKRSLASRLPAVLSHGIIV*

>Glyma20g38560.2   sequence type=predicted peptide   gene model=Glyma20g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATISAVQVEFLEFPAVVTSPASGKTYFLGGAGERGLTIEGKFIKFTGIGVYLEDKAVPSLAAKWKGKTSEELVHTLHFYRDIISGPFEKLIRGSKILPLAGAEYSKKVMENCVAHMKSVGTYGDAEAAAIEKFAEAFKNVNFAPGASVFYRQSPDGILGVSCLF*

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