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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55200 | AT | Annotation by Michelle Graham. TAIR10: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214 | SoyBase | E_val: 0 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG1898 | KOG | Splicing factor 3b, subunit 3 | JGI | ISS | |
| PTHR10644 | Panther | DNA REPAIR/RNA PROCESSING CPSF FAMILY | JGI | ISS | |
| PTHR10644:SF1 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | JGI | ISS | |
| PF03178 | PFAM | CPSF A subunit region | JGI | ISS | |
| UniRef100_H6UJ40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Spliceosomal-like protein n=1 Tax=Camellia sinensis RepID=H6UJ40_CAMSI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NJ61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NJ61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g38460 not represented in the dataset |
Glyma20g38460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g240500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g38460.1 sequence type=CDS gene model=Glyma20g38460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATCTCTACAGTCTTACTCTGCAGCGCCCCACCGGCATCATCTGCGCCATAAACGGCAACTTCTCCGGCGGCAAGAGCCAGGAAATCGTGGTGGCCCGCGGTAAGGTTCTCGATCTCCTCCGCCCCGACGACAATGGTCGGATCCAAACCATTCTCTCCGTCGAAATCTTTGGCGCCATCCGCTCCCTCGCCCAGTTCCGCCTCATGGGCGCCCAGAAGGACTACATCGTCGTCGGCTCCGACTCCGGCCGCATCGTCATCCTTGAATACAACAAGGAGAAGAACGTCTTCGACAAAATCCACCAAGAAACCTTCGGCAAATCCGGTTGCCGCCGAATTGTCCCCGGTCAGTACCTCGCCATCGATCCCAAAGGTAGGGCCGTTATGATTGGCGCCTGCGAGAAGCAGAAACTCGTTTATGTTTTGAATAGGGACACTGCTGCTAGGTTAACCATTTCTTCCCCTTTAGAGGCTCATAAATCCCACACTTTAGTTTACTCAATTTGTGGCGTTGATTGTGGCTTTGAGAACCCTATTTTTGCTGCCATTGAATTGGATTACTCTGAGGCTGACCAGGATTCCACTGGCCTGGCTGCTTCTGAGGCTCAGAAGCATTTGACCTTTTACGAGCTTGATCTTGGCCTTAACCATGTTTCCAGAAAGTGGTCCGAGCAGGTTGATAATGGGGCCAATTTGCTTGTTACTGTTCCTGGAGGTGGTGATGGCCCCAGTGGTGTGCTTGTTTGTGCTGAGAATTTTGTTATTTATAAGAATCAGGCACATCCGGAGGTCAGGGCTGTGATTCCTCGGCGGACCGACTTGCCGGCCGAGCGCGGCGTGCTTATTGTGTCAGCTGCTATGCATAAATTGAAGAACATGTTCTTCTTCCTCCTGCAGACAGAGTATGGGGATATTTTTAAGGTCACCTTGGAGCATAATAATGATCGTGTCTCGGAGTTGAAGATTAAGTATTTTGATACCATTCCTGTTACAGCTTCGATGTGTGTGCTGAAGTCGGGGTTCTTGTTTGCGGCATCGGAGTTTGGGAACCATGCTCTGTATCAGTTTAAGTCTATAGGGGATGAGGATGATGTGGAGGCGTCGTCTGCCACGTTGATGGAAACTGAGCAAGGTTTTCAGCCTGTGTTTTTCCAGCCCAGGAGGCTGAAGAACCTTGTTAGGATTGACCAGGTTGAGAGTTTGATGCCGATAATGGATATGAAGGTCAGTAATCTTTTTGAAGAGGAAACTCCTCAGATTTATACTCTCTGTGGGCGTGGTCCTCGATCCTCTTTGAGGATCCTGAGAACTGGTTTAGCAGTTAGTGAGATGGCCGTGTCCAAGCTTCCTGGTATACCTAGCGCTGTTTGGACTGTGAAGAAGAATGCTATTGATGAGTTTGATGCATACATTGTTGTGTCATTCACAAATGCTACACTTGTGCTTTCCATTGGTGAGACTGTTGAAGAAGTCAGTGACAGTGGGTTTCTTGACACTACACCCTCCCTTGCTGTTTCTTTGATAGGAGATGATTCTCTCATGCAGGTTCACCCAAATGGTATTAGGCATATTAGGGAGGATGGCCGTATTAATGAATGGAGAACTCCTGGAAAGAGGACTATTTCAAAAGTTGGATCAAATAGACTTCAAGTGGTTATTGCACTGAGTGGAGGGGAGCTTATATATTTTGAAGTGGATGTAACTGGTCAGTTGATGGAGGTGGAGAAGCATGAAATGTCTGGGGATGTTGCTTGTTTGGACATTGCTCCAGTGCCTGAAGGCAGACAAAGATCTCGGTTTCTTGCAGTTGGGTCATATGACAAGACCATCCGCATCTTATCGCTTGATCCCGATGATTGTATGCAGGCTCTAAGTGTACAAAGTGTTTCTTCAGCTCCAGAATCTCTTCTTTTTCTCGAAGTTCAAGCATCTGTTGGGGGTGAGGATGGTGCCGATCATCCTGCTAGCCTTTTCTTGAATGCTGGCTTACAGAATGGTGTCATGTTTAGAACTGTGGTGGATATGGTTACAGGTCAGCTTTCTGATTCACGTTCCCGATTCTTGGGATTGAGAGCCCCAAAATTGTTTCCCATTATTGTGAGAGGCAAGCGTGCTATGCTTTGCTTGTCAAGTCGACCTTGGCTTGGTTATATTCACCAAGGACATTTCCTTTTAACGCCCCTGTCATATGAAACCCTTGAATATGCTGCCTCATTTTCATCTGACCAATGTGTGGAAGGTGTAGTTGCTGTTGCTGGTGAGGCCTTGAGGATTTTTACCATTGAAAGATTAGGAGAGACATTTAATGAAACTGTAATTCCATTAAGGTACACACCAAGGAAATTTGTGCTGCAACCCAAACGGAAACTTCTGGTGATGATTGAGAGTGATCAAGGAGCATTAACTGCAGAAGAGCGTGAAGCTGCAAGGAAAGAGTGTTTTGAGTCTGCTCAAGCTGGGGAAAATGGCACTGAAAGTGCAGACCAAATGGAGAATGGTGGTGAGGATGAAGATAAAGATGATCCACTTTCAGATGAGCATTATGGTTATCCAAAAGCTGAATCAGATAAATGGGCTTCCTGCATCAGAGTTCTTGATCCAAGGACAGGAAATACTACTTGTCTTTTGGAGCTTCAGGAAAATGAAGCTGCTTTCAGCATTTGCACCATAAATTTCCATGATAAGGAATACGGAACTCTTTTAGCTGTTGGCACTGCGAAGGGACTGCAATTTTTGCCCAAAAGGACCATAACTGCTGGATTCATTCATATTTATAGGTTCGTAGAGGATGGAAGATCTCTTGAACTTCTTCACAAAACTCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAATTTCAAGGAAGATTACTTGCAGGGATAGGACCTGTGCTCAGGTTGTATGATTTGGGAAAAAGAAGATTGTTAAGAAAATGTGAGAATAAGCTATTCCCCAACACAATTGTCTCCATTCATGCATATCGCGATCGGATTTATGTTGGTGATGTCCAAGAGTCCTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGTGTTCCAAGGTGGCTTACTGCATCATACCACATAGATTTTGACACCATGGCAGGTGCAGACAAGTTTGGAAATATCTATTTTGTGCGGTTGCCACAGGATGTTTCAGATGAGATAGAAGAAGATCCTACTGGTGGGAGGATCAAGTGGGAGCAGGGAAAGCTGAATGGAGCTCCCAATAAGGTGGAAGAAATTGTACAGTTTCACATTGGTGATGTCGTCACATGCTTGCAAAAGGCTTCTCTTATACCAGGTGGTGGAGAGTGCATTGTATTTGGAACAGTTATGGGAAGTGTTGGGGCATTACATGCCTTTACTTCACGAGATGATGTTGATTTCTTTTCTCATTTGGAGATGCATATGAGGCAGGATCACCCACCTTTGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCCGATGAATTGGACAGAACCCCTGGAGAGATACTGAAGAAACTTGAGGAAGTGCGAAATAAGATTATTTAA
>Glyma20g38460.1 sequence type=predicted peptide gene model=Glyma20g38460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYLYSLTLQRPTGIICAINGNFSGGKSQEIVVARGKVLDLLRPDDNGRIQTILSVEIFGAIRSLAQFRLMGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVYSICGVDCGFENPIFAAIELDYSEADQDSTGLAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGGGDGPSGVLVCAENFVIYKNQAHPEVRAVIPRRTDLPAERGVLIVSAAMHKLKNMFFFLLQTEYGDIFKVTLEHNNDRVSELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFKSIGDEDDVEASSATLMETEQGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKVSNLFEEETPQIYTLCGRGPRSSLRILRTGLAVSEMAVSKLPGIPSAVWTVKKNAIDEFDAYIVVSFTNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTISKVGSNRLQVVIALSGGELIYFEVDVTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDKTIRILSLDPDDCMQALSVQSVSSAPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVMFRTVVDMVTGQLSDSRSRFLGLRAPKLFPIIVRGKRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCVEGVVAVAGEALRIFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVMIESDQGALTAEEREAARKECFESAQAGENGTESADQMENGGEDEDKDDPLSDEHYGYPKAESDKWASCIRVLDPRTGNTTCLLELQENEAAFSICTINFHDKEYGTLLAVGTAKGLQFLPKRTITAGFIHIYRFVEDGRSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKRRLLRKCENKLFPNTIVSIHAYRDRIYVGDVQESFHYCKYRRDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNKVEEIVQFHIGDVVTCLQKASLIPGGGECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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