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Report for Sequence Feature Glyma20g38440

Feature Type:gene_model
Chromosome:Gm20
Start:46031360
stop:46034729
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g38440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75270AT Annotation by Michelle Graham. TAIR10: dehydroascorbate reductase 2 | chr1:28250255-28251237 REVERSE LENGTH=213 SoyBaseE_val: 1.00E-118ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0010731GO-bp Annotation by Michelle Graham. GO Biological Process: protein glutathionylation SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0043295GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione binding SoyBaseN/AISS
GO:0045174GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione dehydrogenase (ascorbate) activity SoyBaseN/AISS
KOG1422 KOG Intracellular Cl- channel CLIC, contains GST domain JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF15Panther GLUTATHIONE-S-TRANSFERASE-RELATED JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_D2WL74UniRef Annotation by Michelle Graham. Most informative UniRef hit: DHAR class glutathione transferase DHAR2 n=1 Tax=Populus trichocarpa RepID=D2WL74_POPTR SoyBaseE_val: 4.00E-121ISS
UniRef100_I1NJ59UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NJ59_SOYBN SoyBaseE_val: 1.00E-150ISS

Expression Patterns of Glyma20g38440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g38440
ParalogEvidenceComments
Glyma10g43730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g38440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g240300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g38440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g38440
>Glyma20g38440.1   sequence type=CDS   gene model=Glyma20g38440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCGAGGTTGCTGTTAAGGCTGCTGTTGGGGCTCCAAATGTTCTCGGAGATTGTCCATTTTCCCAAAGGGTCCTCTTAACTTTGGAGGAGAAGAAAATTCCTTACAAACTCCACCTCATCGATCTCAGTAACAAACCCGAATGGTTTTTGGGTGTGAATCCTGAAGGGAAGGTGCCAGTGGTTCTTTTTGATGGCAAATGGGTGGCTGATTCTGATGTAATTGTGGGGATACTAGAGGAAAAGTACCCAGAACCCTCTCTAATCACTCCTCCTGAATTTGCCTCCGTGGGATCAAAGATATTTGGGTCTTTTGTGAGTTTTCTGAAGAGCAAGGATACAAACGATGGAACTGAGCAAGCATTGGTTGCTGAATTGAGTGCCTTGGATGAACATCTCAAGACCCATGGTCCATACATTGCTGGGGAGAAAGTCACTGCTGTTGATCTGAGTTTGGCACCAAAACTGTACCATCTTGTGGTAGCACTGGGCCACTTCAAGAATTGGAATATTCCAGAAAGTTTGGTACATGTGCACAATTACACTAAGCTGCTGTTCTCCCGAGAGTCATTTGAGAAAACAAAGCCTCCAAAGGAGGAATATGTTATTGCTGGATGGGCGCCTAAGGTGAATGCTTGA
Predicted protein sequences of Glyma20g38440
>Glyma20g38440.1   sequence type=predicted peptide   gene model=Glyma20g38440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALEVAVKAAVGAPNVLGDCPFSQRVLLTLEEKKIPYKLHLIDLSNKPEWFLGVNPEGKVPVVLFDGKWVADSDVIVGILEEKYPEPSLITPPEFASVGSKIFGSFVSFLKSKDTNDGTEQALVAELSALDEHLKTHGPYIAGEKVTAVDLSLAPKLYHLVVALGHFKNWNIPESLVHVHNYTKLLFSRESFEKTKPPKEEYVIAGWAPKVNA*






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