Glyma20g38200 - SoyBase

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Report for Sequence Feature Glyma20g38200

Feature Type:	gene_model
Chromosome:	Gm20
Start:	45849577
stop:	45859709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g38200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16785	AT	Annotation by Michelle Graham. TAIR10: phospholipase D P1 \| chr3:5711329-5718696 FORWARD LENGTH=1096	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF2	Panther	PHOSPHOLIPASE D ZETA	JGI		ISS
PF00614	PFAM	Phospholipase D Active site motif	JGI		ISS
UniRef100_A2Q157	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D/Transphosphatidylase; Pleckstrin-like n=1 Tax=Medicago truncatula RepID=A2Q157_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DE07	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DE07 related cluster n=1 Tax=unknown RepID=UPI000233DE07	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma20g38200

Locus	Gene Symbol	Protein Name
	PLDZ1	PHOSPHOLIPASE D ZETA1

Expression Patterns of Glyma20g38200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g38200 not represented in the dataset	Glyma20g38200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g38200

Paralog	Evidence	Comments
Glyma10g29110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g38200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g238000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g38200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g38200

Limit To All Plant Sequences

>Glyma20g38200.1   sequence type=CDS   gene model=Glyma20g38200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCTGAGCCACTGCTTCCACCGTCGGAAGCATTGCCAGAATCTCACCACCCCTCCCGGCGATGCGGCGAACCGGCGTGGATTTTCGAAGAATTGCCGACGGCGACCATCGTTTCCGTGTCGAGACCAGAGACCGGAGACATTAGTCCAATCCTACTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTAGTGAAGAAGGCATCACAACTTCTCTATTTACAGTTCTGTTTGCGGAAACGTGCATTAATTGAAGATTTTCATGACAAGCAAGAGCAGTTAAAAGAATGGCTTCACAACTTAGGAATAGTAGATCAAACGGTAATGGTACAAGATGACGAAGAACCTGATGATGGAGCTGTGCCTTTACACCATGAAGACAGTGTTAAAAACAGATATGTTCCATCTGTTGCTGCTCTATCAATAATCCGTCCATCAATAGGAGGGCAGCAGACAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGTTATTTGAATCGATTCTTGGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCCAGGCTATCCTTTTTACAGGAGTATGGTCCCAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTCAGATGTATCATGCTTCCCATGCAATTGGTTTCACTGTTGTAATAACAGCTGGAAGAAGGTATGGTCTGTTTTGAAACCTGGGTTTTTGGCCTTCCTGGATGATCCCTTTAACAACAAACCACTGGATATAATGATTTTTGATATCCTCCCTTACTCAAATGGAGATGGAGGGACCAAAATATTTTTAGCTGATCCTGTAAAAGAACGCAACCCTTTGCGTTACACATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGCAGTGCTAAAGTAAAAGCTTGGGTTACTGCAATCAATGAAGCTAGTCTAAGACCTCTTGAGGGCTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTTGATGGACAGGCAGCATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGTTGTGCCCAGAGCTATATCTGAGACGGCCTTTTGATAGCTTTTCTACCTCTCGGTTAGATTCATTACTAGAAGAAAAGGCTAACCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTAAAAATCAACAGCTTGTACAGTATGAGAAGACTGTTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCTGATCATTTCGCTGCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATCGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGACTGTCCTTCTGTAATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAAAGATGAATTGGATCGCAAGAAGTATCCCCGTATGCCATGGCACGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGGAATTCCGCTACTTATGCCTCACCATCACATGGTCCTCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTGATGAAAAGAAAGACAAAGACAAGAGGAAAGGAATTGGCAGGCAGGATTCATTTTCCTCAGAGTCTCCAATGCAGGATATACCACTACTTTTGCCTCAAGAAGCTGATGGACTAGATACTTCAAATGGAGATCATACAAATTTAAGTGAAAATTTTCCATTGTCCCAAAAGCTGGAGCATGAAACTTTAGTTTCAGACACCCAGATGAAAGGGTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGGGCACAACCTGTTGCCAATGCTCTAGATGATTGGTGGGAAACACCAGAAGAAACCAATGATGACATTACTTTGGAATATGGAGAAGTTGGTCCACGTACTACCTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAGGGGATGACATAATACTCAACCGTGTTTTGGAAGCACTATACAGGCGTATTTTGCAAGCCCACAAAGATCAGAAAGATTTTAGAGTTATAATTGTGATGCCCCTCTTGCCTGGTTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACTGTAAGAGCCTTAACACACTGGCAGTATCGAACAATTTCTAGAGAAAATCACTCCATATTAGACAATCTTGAAGCTATACTTGGTCCTAAGACACAAGATTATATTTCTTTCTATGGTCTACGATCTCATGGCAGACTTTATGAAAATGGCCCTGTGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGACCGTATAGCTTTTATTGGATCATCTAATATAAATGACCGTAGTTTGCTTGGATTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGACAAAGAATATGTTGACTCGTTGATGAATGGAAAACCATGGAAGGCTGGGAAATTTTCCTACAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATGCCGGAGAGATCAGTAAAATCAGTGATCCGGTGGCAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTTGCTTGCATTCCCAACAATCAGATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCACTGGAAAGAAAAACTTGGTCATACCACCATAGATATGGGAATAGCCCCAGATAAGTTGGTCTGTCATGAGAATGGAGAAATCAAAATAATAGACCCTATAGATAGGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCCTTGGAGTTCATGCGTGAGGAAGATCTTAGACCAGCTGTTATTGAGAGCGAGTTTTATGTCGCTCCTCAAGTATATCATTAA

Predicted protein sequences of Glyma20g38200

Limit To All Plant Sequences

>Glyma20g38200.1   sequence type=predicted peptide   gene model=Glyma20g38200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSEPLLPPSEALPESHHPSRRCGEPAWIFEELPTATIVSVSRPETGDISPILLSYTIELQYKQFKWRLVKKASQLLYLQFCLRKRALIEDFHDKQEQLKEWLHNLGIVDQTVMVQDDEEPDDGAVPLHHEDSVKNRYVPSVAALSIIRPSIGGQQTIADRAKVAMQGYLNRFLGNLDIVNSQEVCRFLEVSRLSFLQEYGPKLKEGYVMVKHLSNISQDSDVSCFPCNWFHCCNNSWKKVWSVLKPGFLAFLDDPFNNKPLDIMIFDILPYSNGDGGTKIFLADPVKERNPLRYTFKVTSGNRSILLRTTSSAKVKAWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFDSFSTSRLDSLLEEKANQGVQIYVLLYKEVSLALKINSLYSMRRLFKIHENVRVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMKDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHGIPLLMPHHHMVLPHYMGRSKEIDIDEKKDKDKRKGIGRQDSFSSESPMQDIPLLLPQEADGLDTSNGDHTNLSENFPLSQKLEHETLVSDTQMKGFQDEVVPLNLGAQPVANALDDWWETPEETNDDITLEYGEVGPRTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAGDDIILNRVLEALYRRILQAHKDQKDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISRENHSILDNLEAILGPKTQDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRIAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVDSLMNGKPWKAGKFSYSLRCSLWSEHLGLHAGEISKISDPVADTTYKDLWSATAKENTRIYHEVFACIPNNQIHSRAALRQSMVHWKEKLGHTTIDMGIAPDKLVCHENGEIKIIDPIDRLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQVYH*

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