|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27620 | AT | Annotation by Michelle Graham. TAIR10: cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336 | SoyBase | E_val: 2.00E-86 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005675 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: holo TFIIH complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016591 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, holoenzyme | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| PTHR10026 | Panther | CYCLIN | JGI | ISS | |
| PTHR10026:SF8 | Panther | CYCLIN H | JGI | ISS | |
| UniRef100_B9RF84 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin h, putative n=1 Tax=Ricinus communis RepID=B9RF84_RICCO | SoyBase | E_val: 3.00E-99 | ISS |
| UniRef100_UPI000233DDFD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DDFD related cluster n=1 Tax=unknown RepID=UPI000233DDFD | SoyBase | E_val: 7.00E-137 | ISS |
|
Glyma20g37861 not represented in the dataset |
Glyma20g37861 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g234800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g37861.1 sequence type=CDS gene model=Glyma20g37861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGTCGTGTACATTGTCTCTGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGCAGATGATAAAACCCTTGTTTTGCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTAGGCAACTCAAATGCACTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTAATTGAATTGAAGCATATCAACCGAAAACTAAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAG
>Glyma20g37861.1 sequence type=predicted peptide gene model=Glyma20g37861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SSCTLSLEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNADDKTLVLQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALGNSNALHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVIELKHINRKLKSCWGHHSHDEGKKREKKSKHKSKKSSNEAQNMPSIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||