Glyma20g37430 - SoyBase

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Report for Sequence Feature Glyma20g37430

Feature Type:	gene_model
Chromosome:	Gm20
Start:	45326928
stop:	45329611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g37430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27320	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:9629254-9630746 FORWARD LENGTH=344	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009939	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010325	GO-bp	Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0010476	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin mediated signaling pathway	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0048444	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9REZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1, putative n=1 Tax=Ricinus communis RepID=B9REZ1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LBF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBF7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g37430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g37430

Paralog	Evidence	Comments
Glyma10g29910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g37430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g230600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g37430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g37430

Limit To All Plant Sequences

>Glyma20g37430.3   sequence type=transcript   gene model=Glyma20g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATTCATAGTCTAATAGAAAAGAATTTCAACTCTCGTTTCACGAGAATTAGGAAGTTATTTCCAGAGTTTGATGTTGGTGAGTTCCTGTATCCCTGTGCCACTTTTTAGCATTTTCTACAGTGCGCACGGCTTCTTATCCTTCACCATCCCATTCCTCTTCTCTTTCCCTGCCACTGAACCCAAACAAACCAGCGCTGTCGTTGGATCTCACACAACCCGATTCTCGTGCTTTTATGGATTTGCGTCGCCAAGAGAGTTTGTGATTTTCAGCTTGCGAAGCGCCTTGCGGATCTGTGATCGGAATACAGGATCGTTTCAATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGATAGGCTTAACTTTTGCTATAATACACGACAAGTGGGCGTTAGAAGATTGTGTAGGAAATAGGTATGTTACTACTTAACCTTTTTTTTTTGTTTGCTTTTTGGGTTCTTTACTGTAGGACTTTGCTCCCGCTATTAGGTACTTACATGCTACTAAATGTGTCGTGAGATTTGGTGTAATCAGCATATAGCTGTGTGATGTTTTTCCTGAGCACATAATGAGGAAATTGGGTGCTGCGGATAGGTGAAAGCTTTTTAGGACAAAGGGAGCTCAGGTCATGTTTATGGGAACCACCAAAGTTGTGATTACCCACTCTGACTTCTAGCCAAAAAGGAGAGGAAGGCCTTATTCTATTTCTGGGCGTGACCTTGATGCCAATCAGGTGGGGCTTGTCGTTGTCTGGCTAGTGTTATATATATATATATATATATAACTAATTTTGGAACTAGGATAGGAAAATATCAATGATATGTTGGTGCTGTTAGGTTATATACGTCTGTGCTATCTTCATATGAGTGTTTTAAGACTGTTCACTCTTTCTCTATATAGCTAATTTTACATTCCCATGTCTTGGGTTGGGTTTGTCCTTGTTTGACGATGGAGACTCCTTGCAAATGTAAATGGATGTCTTTTCCGCAGCAATGCTTAGGGTTTGTATTATGTTTGCTTCTGTATATATAGATATTTTGCAGCTTTTTCTTATGCATTATTATGGGTTAAATTTCTGCTTCAATGTGCATTGGTCTGTGAATTTTCGT

Coding sequences of Glyma20g37430

Limit To All Plant Sequences

>Glyma20g37430.2   sequence type=CDS   gene model=Glyma20g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGA

>Glyma20g37430.3   sequence type=CDS   gene model=Glyma20g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGA

Predicted protein sequences of Glyma20g37430

Limit To All Plant Sequences

>Glyma20g37430.2   sequence type=predicted peptide   gene model=Glyma20g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRLAEGEERSVNILDLEKPVNSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSASWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAMESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVGVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATVGFYLLPNNEHFSPVMDEIKYFVGSDC*

>Glyma20g37430.3   sequence type=predicted peptide   gene model=Glyma20g37430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRLAEGEERSVNILDLEKPVNSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSASWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAMESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVGVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATVGFYLLPNNEHFSPVMDEIKYFVGSDC*

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