Glyma20g37135 - SoyBase

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Report for Sequence Feature Glyma20g37135

Feature Type:	gene_model
Chromosome:	Gm20
Start:	45081191
stop:	45089122
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g37135

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04380	AT	Annotation by Michelle Graham. TAIR10: SET-domain containing protein lysine methyltransferase family protein \| chr3:1161602-1164539 FORWARD LENGTH=492	SoyBase	E_val: 4.00E-169	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0018024	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity	SoyBase	N/A	ISS
KOG1082	KOG	Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing	JGI		ISS
PTHR22884	Panther	SET DOMAIN PROTEINS	JGI		ISS
PTHR22884:SF23	Panther	SET DOMAIN PROTEIN	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
PF05033	PFAM	Pre-SET motif	JGI		ISS
PF10440	PFAM	WIYLD domain	JGI		ISS
UniRef100_G7I6T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase SUVR4 n=1 Tax=Medicago truncatula RepID=G7I6T4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DD99	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD99 related cluster n=1 Tax=unknown RepID=UPI000233DD99	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g37135

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g37135 not represented in the dataset	Glyma20g37135 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g37135

Paralog	Evidence	Comments
Glyma10g30833	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g37135 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g227500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g37135

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g37135

Limit To All Plant Sequences

>Glyma20g37135.2   sequence type=transcript   gene model=Glyma20g37135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCCCGATACATTTTCTTAGCAACCAAACGCATACTCTCATTCTCTGAGGGTTTATGAGTTTCGACTCTGCGTATTGCTTTTATGAACAAAACTCGTTTCCTTTTTTCGTTAGGTAACTTGTTCTGCAAGTTCCATCATAGCTCAGCACCTTCTTCTTCGCGAAATATCTCCATCGTGTGATTGTGGAAAAAGGGTTAATTGCGTGGGCATATAAAGCTCAATTTGATTGCGAGTTTTGGTAAAAGGCTGTTTGGAGGGGCACAAAGTCTTGGCGTACAATTGGCTTCTACATTAGTGTTCAATTGCATGACAATTACTTTTGGAACTATCATGGCTCCTCATCCAAGAGTCATTAAGGCTTATAATGCTATGAGATCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTACAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACTCTTATAGATGCATACTTTGAGTTAAAGGAAGCTAAGCAAACAGAAGGTAAGAGAAAGGCTCCAATCAGTTATCTTAATGGGAGAAAGCCAAAACAGGAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCCAGTCAAGGGTTGTCTGTAGAAGACTCGGAAATAACTCCCAACGCATTTAAACAGAAAATCATTAAATCTTCTCAAACCTCCATTGTACATATGAAGCCCACGAGCAGTTCACAAGCATTGCAGAGAATGTCGAGTGAGGTAGAAAGGATCTCAACTTTACCTTGCATGCCTGCTAGAGATAGAAAATTGCATCGTGGGAAGGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGTGTCCAGAGGAAAAATATATCAAATGATCATCAACAGAAGGAGCTGATGATACCAAGAACTGAGAAACTTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCAGCTAATGCTTCAAATGGAAATTGTTGTGCCAAATCTCTATCAGCTCTGTATCAGAATGTGCCCAAGAAAGATGCTACCTCAGCATGCAATAATAGTAAAAGAACTCAGAAGGGTAGTATTGACATTGCCTCTTCACCTTTGGGAGAAATTAAAATTTCTTTAAACTGCGAAGCTGCTTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTATCATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACAAGATAGTCGAGCCTCAATCATCTATGGTTAAGCTATTAGATGATTTATGTGGAATTTACTTGAAGCTGGGCTTGAGTTTAAATCGAAACGGGTCAACTCCCAAGTCTGCAAATTCACGCAATGTGGCATGTCTGCCACTGCAAGCTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCCGAGAATGTTAAAATATCACTGTTGGATGAAACTGGAAGTGAGGACGTGCCTCAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAACGTCAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCATGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGAAATATTTTTAAAAGATTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGCCCAGTGGAGAGGTCCAGGAATGACATCATGGCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCATCAGAACTCTAGAAGATTTGCCCAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACACCTGATCGTCACTATTATCATCTTGCTCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTGGCTTCTGTCGTGATAAGAAACAAAAAGGAACTAGATTATTGAAAGGTAAAAAACTCAAGGAGATACATGCCAGAAAGACGGAGTAGCTAGTTGACACTTTAGCATTCTTTATTCGTTGTTTTCAGTTACCAGCTATTTGCTGAAGATCGGCAATAAATGTTTTTAAACATCTTAATATGCTTGCTGGAGCAGCGAATGCTGATAAAATAGATGATTTTTTGCCAGGAAAGTAAGAAGGTGAATTTATCTGGGATTACTTGAAAAATCCCTAAATGTAAATCCTTTCTTGCGTAATTATTCATACCTGAATGATCAAAATTATTAGTTGGTTTTATAT

Coding sequences of Glyma20g37135

Limit To All Plant Sequences

>Glyma20g37135.1   sequence type=CDS   gene model=Glyma20g37135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATTACTTTTGGAACTATCATGGCTCCTCATCCAAGAGTCATTAAGGCTTATAATGCTATGAGATCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTACAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACTCTTATAGATGCATACTTTGAGTTAAAGGAAGCTAAGCAAACAGAAGGTAAGAGAAAGGCTCCAATCAGTTATCTTAATGGGAGAAAGCCAAAACAGGAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCCAGTCAAGGGTTGTCTGTAGAAGACTCGGAAATAACTCCCAACGCATTTAAACAGAAAATCATTAAATCTTCTCAAACCTCCATTGTACATATGAAGCCCACGAGCAGTTCACAAGCATTGCAGAGAATGTCGAGTGAGGTAGAAAGGATCTCAACTTTACCTTGCATGCCTGCTAGAGATAGAAAATTGCATCGTGGGAAGGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGTGTCCAGAGGAAAAATATATCAAATGATCATCAACAGAAGGAGCTGATGATACCAAGAACTGAGAAACTTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCAGCTAATGCTTCAAATGGAAATTGTTGTGCCAAATCTCTATCAGCTCTGTATCAGAATGTGCCCAAGAAAGATGCTACCTCAGCATGCAATAATAGTAAAAGAACTCAGAAGGGTAGTATTGACATTGCCTCTTCACCTTTGGGAGAAATTAAAATTTCTTTAAACTGCGAAGCTGCTTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTATCATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACAAGATAGTCGAGCCTCAATCATCTATGGTTAAGCTATTAGATGATTTATGTGGAATTTACTTGAAGCTGGGCTTGAGTTTAAATCGAAACGGGTCAACTCCCAAGTCTGCAAATTCACGCAATGTGGCATGTCTGCCACTGCAAGCTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCCGAGAATGTTAAAATATCACTGTTGGATGAAACTGGAAGTGAGGACGTGCCTCAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAACGTCAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCATGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGAAATATTTTTAAAAGATTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGCCCAGTGGAGAGGTCCAGGAATGACATCATGGCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCATCAGAACTCTAGAAGATTTGCCCAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACACCTGATCGTCACTATTATCATCTTGCTCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTGGCTTCTGTCGTGATAAGAAACAAAAAGGAACTAGATTATTGAAAGGTAAAAAACTCAAGGAGATACATGCCAGAAAGACGGAGTAG

>Glyma20g37135.2   sequence type=CDS   gene model=Glyma20g37135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATTACTTTTGGAACTATCATGGCTCCTCATCCAAGAGTCATTAAGGCTTATAATGCTATGAGATCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTACAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACTCTTATAGATGCATACTTTGAGTTAAAGGAAGCTAAGCAAACAGAAGGTAAGAGAAAGGCTCCAATCAGTTATCTTAATGGGAGAAAGCCAAAACAGGAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCCAGTCAAGGGTTGTCTGTAGAAGACTCGGAAATAACTCCCAACGCATTTAAACAGAAAATCATTAAATCTTCTCAAACCTCCATTGTACATATGAAGCCCACGAGCAGTTCACAAGCATTGCAGAGAATGTCGAGTGAGGTAGAAAGGATCTCAACTTTACCTTGCATGCCTGCTAGAGATAGAAAATTGCATCGTGGGAAGGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGTGTCCAGAGGAAAAATATATCAAATGATCATCAACAGAAGGAGCTGATGATACCAAGAACTGAGAAACTTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCAGCTAATGCTTCAAATGGAAATTGTTGTGCCAAATCTCTATCAGCTCTGTATCAGAATGTGCCCAAGAAAGATGCTACCTCAGCATGCAATAATAGTAAAAGAACTCAGAAGGGTAGTATTGACATTGCCTCTTCACCTTTGGGAGAAATTAAAATTTCTTTAAACTGCGAAGCTGCTTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTATCATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACAAGATAGTCGAGCCTCAATCATCTATGGTTAAGCTATTAGATGATTTATGTGGAATTTACTTGAAGCTGGGCTTGAGTTTAAATCGAAACGGGTCAACTCCCAAGTCTGCAAATTCACGCAATGTGGCATGTCTGCCACTGCAAGCTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCCGAGAATGTTAAAATATCACTGTTGGATGAAACTGGAAGTGAGGACGTGCCTCAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAACGTCAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCATGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGAAATATTTTTAAAAGATTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGCCCAGTGGAGAGGTCCAGGAATGACATCATGGCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCATCAGAACTCTAGAAGATTTGCCCAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACACCTGATCGTCACTATTATCATCTTGCTCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTGGCTTCTGTCGTGATAAGAAACAAAAAGGAACTAGATTATTGAAAGGTAAAAAACTCAAGGAGATACATGCCAGAAAGACGGAGTAG

Predicted protein sequences of Glyma20g37135

Limit To All Plant Sequences

>Glyma20g37135.1   sequence type=predicted peptide   gene model=Glyma20g37135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTITFGTIMAPHPRVIKAYNAMRSLGISDEEVKPVLKNLLQLYDRNWELIEEDNYRTLIDAYFELKEAKQTEGKRKAPISYLNGRKPKQELHLVDGDDQVSSTDNSSQGLSVEDSEITPNAFKQKIIKSSQTSIVHMKPTSSSQALQRMSSEVERISTLPCMPARDRKLHRGKASAAGHCEDPIDEPSNPRVQRKNISNDHQQKELMIPRTEKLKLHLGPVSTSYNGSANASNGNCCAKSLSALYQNVPKKDATSACNNSKRTQKGSIDIASSPLGEIKISLNCEAALGQPNFRIPDLDAIMKSIEEKYLKAHKIVEPQSSMVKLLDDLCGIYLKLGLSLNRNGSTPKSANSRNVACLPLQAVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKEIFLKDCMSMKLEPLDHHFVYCQECPVERSRNDIMAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGIRTLEDLPKGCFVCEYAGEILTNTELYERIMQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFNCCCGSGFCRDKKQKGTRLLKGKKLKEIHARKTE*

>Glyma20g37135.2   sequence type=predicted peptide   gene model=Glyma20g37135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTITFGTIMAPHPRVIKAYNAMRSLGISDEEVKPVLKNLLQLYDRNWELIEEDNYRTLIDAYFELKEAKQTEGKRKAPISYLNGRKPKQELHLVDGDDQVSSTDNSSQGLSVEDSEITPNAFKQKIIKSSQTSIVHMKPTSSSQALQRMSSEVERISTLPCMPARDRKLHRGKASAAGHCEDPIDEPSNPRVQRKNISNDHQQKELMIPRTEKLKLHLGPVSTSYNGSANASNGNCCAKSLSALYQNVPKKDATSACNNSKRTQKGSIDIASSPLGEIKISLNCEAALGQPNFRIPDLDAIMKSIEEKYLKAHKIVEPQSSMVKLLDDLCGIYLKLGLSLNRNGSTPKSANSRNVACLPLQAVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKEIFLKDCMSMKLEPLDHHFVYCQECPVERSRNDIMAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGIRTLEDLPKGCFVCEYAGEILTNTELYERIMQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFNCCCGSGFCRDKKQKGTRLLKGKKLKEIHARKTE*

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