Glyma20g36750 - SoyBase

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Report for Sequence Feature Glyma20g36750

Feature Type:	gene_model
Chromosome:	Gm20
Start:	44787163
stop:	44790632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g36750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28770	AT	Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein \| chr5:10796648-10798147 REVERSE LENGTH=314	SoyBase	E_val: 9.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0071333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to glucose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF67	Panther	ATBZIP25/BZO2H4 (ARABIDOPSIS THALIANA BASIC LEUCIN	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
PF12498	PFAM	Basic leucine-zipper C terminal	JGI		ISS
UniRef100_I1NIQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NIQ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP89 n=1 Tax=Glycine max RepID=Q0GPG9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g36750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g36750

Paralog	Evidence	Comments
Glyma10g30410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g36750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g224500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g36750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g36750

Limit To All Plant Sequences

>Glyma20g36750.2   sequence type=transcript   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATTATTGGTCGATAGGAAAGAAAAAATTGAAAGTCCTGGGTATTGTGCTGGTATTTTATTTTGACGAATATGCCCTGGGGCTCTCGTTTTGTGTAGCTGCGTGCCTCCCTCCATCGCATCATACGATATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAACCCGCCCCTCCCCCTCCGACAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACGGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGACGTTGAAACATTAAGAACAAAGGTAAAGCTCTACTTTATACTTAAACCTACTGGCTCTTTCTAACAAGTTCCATAGGTTTGGCTGACAAGATGGAGGATGGTGTCCAATGAGGGTCATCTTTTACAGTGAAGAAAAGCTAAATTAGAATTAATGTTGCTTCATCTGTTTGGACAAAGTTTATCTGACATGTGTGTTTGTCATTTCCTACCATGTTATTCTCATTTTTAGGTGAAGATGGCCGAAGAGACCGTCAAAAGAATTACTGGATTGAACCCATTGCTTCATGCCATGTCTGATATATCATCACTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCAGCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATCTACTAATCCTATTCCCAGTCATGATCCGATAGTCAACAATGGATTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGAATGCTGCAGTAGTGCTAGGTGGGAACAAGATGGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTATAGGAGCGGATTCGTGGTGGACCTCCATCTAATGGGGAGCAGTGACTAATTAGCCAAATCTCCTGGATGCTTTGCCAGGAAATTATTCTAAAACAGTTATTTCTGTTGGTTATAACTAGAGGCCTATTCTTCTGGAATACATTGTAATTCAATTGATGGGGCACATGATGTTGGATTCAATTAGTGCACCCCGTATTTTTTTAAAAAATAATATAAAATGAACTTTACTTTCTAGTTTAACAATTCTTAATCCCTGCGAATTTTTCAAGTAAATACCCTCATCTGGGGATGCAAACTAATCCAGTCGAGA

>Glyma20g36750.3   sequence type=transcript   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATTATTGGTCGATAGGAAAGAAAAAATTGAAAGTCCTGGGTATTGTGCTGGTATTTTATTTTGACGAATATGCCCTGGGGCTCTCGTTTTGTGTAGCTGCGTGCCTCCCTCCATCGCATCATACGATATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAACCCGCCCCTCCCCCTCCGACAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACGGACCCTGCTGATGTAAAACGAGTAAGGAGGTAACATTATTCTCAAAATTACCTGACTTTGTTGTAGAAAATGCCAGTGATTCTTGTATACTCAGGAGTTAAATATACTATCATGTAATTGTGTTCAGAGAGATTTAGAAGTTTGTTTTACTCAGTAGGATTTGCCAGCTCCTGCTAAGTAAACTCATGATTGGCATGCCAGAAAAGTTGTATCTAGTATCACATTAGATCTTTGAAGTGAGAGTAATGCTGCTTACTCTATTATTTATTTTCCCCCAACAAAATTGTGCATAATCTGTTGAGGTTGTTGCATAGTTCTTAAAGGGATTATGAATCTCCTAATTTATACAGTAAATTGAACAAATTATATACTGGTGTCAAGTTCAACTGCCCTGCCTTTTTTTTCATAAATAGGATTCCATTTTTACCCTCTGTTATTGTAACATATTCATTTGTTTAACT

Coding sequences of Glyma20g36750

Limit To All Plant Sequences

>Glyma20g36750.1   sequence type=CDS   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAACCCGCCCCTCCCCCTCCGACAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACGGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGACGTTGAAACATTAAGAACAAAGGTGAAGATGGCCGAAGAGACCGTCAAAAGAATTACTGGATTGAACCCATTGCTTCATGCCATGTCTGATATATCATCACTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCAGCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATCTACTAATCCTATTCCCAGTCATGATCCGATAGTCAACAATGGATTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGAATGCTGCAGTAGTGCTAGGTGGGAACAAGATGGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTATAG

>Glyma20g36750.2   sequence type=CDS   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAACCCGCCCCTCCCCCTCCGACAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACGGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGACGTTGAAACATTAAGAACAAAGGTAAAGCTCTACTTTATACTTAAACCTACTGGCTCTTTCTAA

>Glyma20g36750.3   sequence type=CDS   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAACCCGCCCCTCCCCCTCCGACAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACGGACCCTGCTGATGTAAAACGAGTAAGGAGGTAA

Predicted protein sequences of Glyma20g36750

Limit To All Plant Sequences

>Glyma20g36750.1   sequence type=predicted peptide   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVFSVDDISDHFWQPPIPVSAAQTSSQMSRSASEWAFQRFLQEASASAPSPPSSSSAADVVFVEIEDQPKPAPPPPTNGAVLPNAPGPVPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSTNPIPSHDPIVNNGLGGISSIENVQQNAAVVLGGNKMGQTASLQRVASLEHL*

>Glyma20g36750.2   sequence type=predicted peptide   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVFSVDDISDHFWQPPIPVSAAQTSSQMSRSASEWAFQRFLQEASASAPSPPSSSSAADVVFVEIEDQPKPAPPPPTNGAVLPNAPGPVPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKLYFILKPTGSF*

>Glyma20g36750.3   sequence type=predicted peptide   gene model=Glyma20g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVFSVDDISDHFWQPPIPVSAAQTSSQMSRSASEWAFQRFLQEASASAPSPPSSSSAADVVFVEIEDQPKPAPPPPTNGAVLPNAPGPVPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRR*

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