Glyma20g36680 - SoyBase

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Report for Sequence Feature Glyma20g36680

Feature Type:	gene_model
Chromosome:	Gm20
Start:	44727077
stop:	44729759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g36680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28300	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr5:10292789-10295101 REVERSE LENGTH=619	SoyBase	E_val: 3.00E-100	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
UniRef100_B0EW04	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trihelix transcription factor n=1 Tax=Glycine max RepID=B0EW04_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NIP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NIP3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g36680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g36680

Paralog	Evidence	Comments
Glyma10g30300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g36680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g224000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g36680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g36680

Limit To All Plant Sequences

>Glyma20g36680.1   sequence type=CDS   gene model=Glyma20g36680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGAGAGAGAAAGACAGAAATCAGAGAGAGAGAGGGGTTGGTGCGTAGTTTGTAAGTTGCTTGCTTGTAGCATTTTGCTGATTTTAATTTACAGTGAGCACAGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTACGGCAAGAATAATAATAATAATAATAATAGTAGCAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACATAAACACACACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTACTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTCGATCAGTTTTAA

Predicted protein sequences of Glyma20g36680

Limit To All Plant Sequences

>Glyma20g36680.1   sequence type=predicted peptide   gene model=Glyma20g36680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCERERQKSERERGWCVVCKLLACSILLILIYSEHRKEEVKKREVVTQNTNTNMFDGVPDQFHQFITPRTSLPLHLPFPLHTSGGTPNTTTFPSNFDPYNHPHQLPLQPNNLLHPLHHKDEDKEENTTVPMNLEIQRDQRQQLPELIDPWNNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELEQLYHQGGSGDHHLENTTQPPLQKQDKMGHHALELEVEGDSRNVVDALVTKQNEQSDEALAVEKITKDRKRKRPDRFEMFKCFCESIVHKIMAQQEEMHNKLLEDMMKRDDEKFTREEAWKKQEIEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASHTLKKVNNDSNINTHITQNPNPSQTENPTLSVAQDTLQVIPSTSSTSTPALPQNPSTYSLNIQNNNNNIPVETNSVLNKGNEKDDVGRRWPKDEVLALINLRCTSVNNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKPVLQSESHLNSPPNQNPEQVTPDQTTQAHESSSQVGSGGGFSVQQQQVDHGGEKTLMQVPSLDFDQF*

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