SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64780 | AT | Annotation by Michelle Graham. TAIR10: ammonium transporter 1;2 | chr1:24061021-24062565 REVERSE LENGTH=514 | SoyBase | E_val: 4.00E-176 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0015695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organic cation transport | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015843 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylammonium transport | SoyBase | N/A | ISS |
| GO:0072488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ammonium transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR11730 | Panther | AMMONIUM TRANSPORTER | JGI | ISS | |
| PTHR11730:SF8 | Panther | AMMONIUM TRANSPORTER 1 | JGI | ISS | |
| PF00909 | PFAM | Ammonium Transporter Family | JGI | ISS | |
| UniRef100_G7I667 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ammonium transporter n=2 Tax=Medicago truncatula RepID=G7I667_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NIL3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NIL3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g36390 not represented in the dataset |
Glyma20g36390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g31080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g221400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g36390.1 sequence type=CDS gene model=Glyma20g36390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGCGCAATGACTTCCAATTCCCATCATACTCTTCTCTCTCTTGCTCCGCCAACCACCTTGCACCCCTCTTCAACGACACCGCCGCCGCAAACTACCTCTGCGCCCAATTCGATTCCATTTCCAAGGGCCTCGCCGACACCACCTACTTTCTAGCCAAGAACACCATGAACATCATGCTCACCAAAGTCCTCGACGCCGCCGCCGGCGGCCTCTCTTACTACCTCTTCGGCTTCGCATTCGCCTTCGGCGCCCTCTCCAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCCGAGATTTCCCGATGGGTGCCTCTCCCTCCGGCGACTACAGCTTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGAATCACCAGCGGCACCATCGCCGAGAGAACACAGTTCGTGGCTTACCTCATCTACTCTTCTTTCTTAACCGGTTTGGTTTACCCCATCGTTTCGCATTGGTTCTGGTCCTCAGACGGTTGGGCCAGCGCGGCTCGTAGCAACGGAAATGTTTTGTTCGGGTCTGGAGTCATCGACTTTGCGGGCTCAGGCGTTGTTCACATGGTTGGCGGGATAGCGGGCATGTGGGGGGCTTTAATTGAAGGCCCGAGAATCGGCCGGTTCGACCGGACGGACCGGTCCGTGGCTTTGCGTGGCCACAGCGCGTCTTTAGTTGTGCTTGGTTCGTTTTTGTTGTGGTTCGGGTGGTACGGCTTCAACCCTGGTTCGTTTATCACTATAGCGAAGGCACTGCGGTTATTGGTGGGCCATTGGAACGCGATTGACGTGTGTAACGGCCTGCTTGACGGGTTCGCTGCGATTACATCGGGCTGTGCCGTAGTAGAACCGTGGGCCGCGATTGTGTGCGGGTTTGAGGCGGCGTGGGTTTTGATTGGGCTTAATAAGCTTGCCGCGAAGGTGGAGTACGATGATCCACTGGAGGCGGCGCAGCTTCACGGCGGGTGTGGCGCGTGGGGAGTGTTCTTCACGAGATTGTTTGCGAAGAGAGTGTACATGGAGGAGATTTGCGGCGTTGGAAGGCCGTTCGGGGCGTTGATGGGCGGCGCAGGTGATTCAGATATTGGTGGTGTGCGGGTGGGTCACGGCGACCATGGCGGCGTTGTTCAAAAGATGAATCTGTTGAGAATTTCGAGGGATGGTGGGTTTGCATATGCATATGATAGCTGA
>Glyma20g36390.1 sequence type=predicted peptide gene model=Glyma20g36390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWRNDFQFPSYSSLSCSANHLAPLFNDTAAANYLCAQFDSISKGLADTTYFLAKNTMNIMLTKVLDAAAGGLSYYLFGFAFAFGALSNGFIGRHFFGLRDFPMGASPSGDYSFFLYQWAFAIAAAGITSGTIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASAARSNGNVLFGSGVIDFAGSGVVHMVGGIAGMWGALIEGPRIGRFDRTDRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFITIAKALRLLVGHWNAIDVCNGLLDGFAAITSGCAVVEPWAAIVCGFEAAWVLIGLNKLAAKVEYDDPLEAAQLHGGCGAWGVFFTRLFAKRVYMEEICGVGRPFGALMGGAGDSDIGGVRVGHGDHGGVVQKMNLLRISRDGGFAYAYDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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