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Report for Sequence Feature Glyma20g35880

Feature Type:gene_model
Chromosome:Gm20
Start:44075564
stop:44076783
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g35880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G36970AT Annotation by Michelle Graham. TAIR10: NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248 SoyBaseE_val: 1.00E-81ISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_F4K5V1UniRef Annotation by Michelle Graham. Most informative UniRef hit: NDR1/HIN1-like 25 n=1 Tax=Arabidopsis thaliana RepID=F4K5V1_ARATH SoyBaseE_val: 7.00E-79ISS
UniRef100_UPI000189D734UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D734 related cluster n=1 Tax=unknown RepID=UPI000189D734 SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g35880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g35880
ParalogEvidenceComments
Glyma10g31730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g35880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g216300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g35880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g35880
>Glyma20g35880.1   sequence type=CDS   gene model=Glyma20g35880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATCATCAGAGACTGAGGATCCACCCTATGGAGGGGGAAGCACCACCACCACCCCCAACAACTCCATTGGTACCTCCAGGCTCGTCAAAATCAGAAAAGCGTATCCCTTTACACCATCCTCCACAACTACGTGCTATGCCAGCAGCATACCCTACAGCACACAAAAGAAGCTGCTGCTGCAAGTGCATATGTTGGATAATAACCTTGCTTGTTCTCCTCCTCATTATCTTGGCTGCAAGTGTTGGAATCCTCTACCTAGTCTTCAAACCAAAGCTTCCTGATTACTCAGTTGACACCCTCAGGATAAGTGATCTGAGGCTTAACTTTGACATGAGCCTCTATGCAAGGTTTGATGTGAAGATCACAGCAACCAACCCAAACAAGAAGATTGGCATATACTATAAAAAGGGTGGAAGGTTGAGTGTGTGGTACACAAACACAAGGCTTTGTGAAGGTTCACTGCCACAGTTCTACCAAGGTCATGAGAACAAAACAATGCTCAATGTGTCCTTGAGTGGTCAAGTGCAGTCTGGAAGCACCTTAATGAATGCACTGCAGCAGCAACAGCAGACAGGGCGCATTCCATTGGATCTCAAGGTGCATGCACCAATAGCCATCAAACTTGGGAGGTTGAAGCTTATGAAGGTGAGAGTCTTGGGAGAATGCCTTTTGGTGGTGGATAGCTTGTCATCTAATAATCTCATAAGCATCAAGGCTAGCAACTGCAAGTTCAGATTGAAACTTTGA
Predicted protein sequences of Glyma20g35880
>Glyma20g35880.1   sequence type=predicted peptide   gene model=Glyma20g35880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADHQRLRIHPMEGEAPPPPPTTPLVPPGSSKSEKRIPLHHPPQLRAMPAAYPTAHKRSCCCKCICWIITLLVLLLIILAASVGILYLVFKPKLPDYSVDTLRISDLRLNFDMSLYARFDVKITATNPNKKIGIYYKKGGRLSVWYTNTRLCEGSLPQFYQGHENKTMLNVSLSGQVQSGSTLMNALQQQQQTGRIPLDLKVHAPIAIKLGRLKLMKVRVLGECLLVVDSLSSNNLISIKASNCKFRLKL*






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