Report for Sequence Feature Glyma20g35650
Feature Type: gene_model
Chromosome: Gm20
Start: 43885841
stop: 43886419
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g35650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G10250 AT
Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195
SoyBase E_val: 9.00E-84 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009644 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to high light intensity
SoyBase N/A ISS
GO:0042542 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3591
KOG
Alpha crystallins
JGI ISS
PTHR11527 Panther
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY
JGI ISS
PTHR11527:SF14 Panther
LETHAL(2) ESSENTIAL FOR LIFE - RELATED
JGI ISS
PF00011 PFAM
Hsp20/alpha crystallin family
JGI ISS
UniRef100_P30236 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 22.0 kDa class IV heat shock protein n=1 Tax=Glycine max RepID=HSP41_SOYBN
SoyBase E_val: 1.00E-136 ISS
UniRef100_P30236 UniRef
Annotation by Michelle Graham. Best UniRef hit: 22.0 kDa class IV heat shock protein n=1 Tax=Glycine max RepID=HSP41_SOYBN
SoyBase E_val: 1.00E-136 ISS
Expression Patterns of Glyma20g35650
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g35650
Paralog Evidence Comments
Glyma10g32000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g35650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g213900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g35650
Coding sequences of Glyma20g35650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g35650.1 sequence type=CDS gene model=Glyma20g35650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGCTACAACAACTCAACTTGTTCTTTCTGTTGCTTTGTGTTGCCAAAGCAAACGGGTCTCTGCTCCCATTCATGGATCCTCCCATCACTCTCTTGGCTGATCTCTGGTCCGATCGCTTCCCAGACCCGTTTCGCGTGCTGGAACATATTCCGTTTGGGGTTGACAAAGATGAAGCATCCATGGCCATGTCACCTGCTAGAGTGGACTGGAAGGAGACCCCAGAGGGGCATGTTATAATGCTGGACGTGCCGGGGCTGAAGAGAGAAGAGATAAAGGTAGAGGTGGAAGAGAATAGGGTGCTGAGAGTGAGTGGTGAAAGGAAGAAGGAGGAGGAGAAGAAGGGGGATCACTGGCACAGAGTGGAGAGATCCTATGGCAAGTTCTGGAGGCAGTTCAGGTTGCCACAAAATGTAGACTTGGATTCTGTCAAGGCCAAGCTGGAGAATGGGGTGCTCACTTTGACACTTGACAAGTTGTCACCTGGTAAGATCAAAGGTCCCAGGGTGGTCAGCATTGCTGGGGAGGATCACCAACAAGGTAATCTCAACAATGATGGGGCCAAGCAGGAGCTTTGA
Predicted protein sequences of Glyma20g35650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g35650.1 sequence type=predicted peptide gene model=Glyma20g35650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLQQLNLFFLLLCVAKANGSLLPFMDPPITLLADLWSDRFPDPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGEDHQQGNLNNDGAKQEL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
