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Report for Sequence Feature Glyma20g35270

Feature Type:gene_model
Chromosome:Gm20
Start:43516065
stop:43518708
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g35270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14550AT Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 14 | chr4:8348521-8349923 REVERSE LENGTH=228 SoyBaseE_val: 3.00E-118ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0010102GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_D2DGW4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aux/IAA protein n=1 Tax=Glycine max RepID=D2DGW4_SOYBN SoyBaseE_val: 8.00E-157ISS
UniRef100_I1NIA3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NIA3_SOYBN SoyBaseE_val: 1.00E-179ISS

Expression Patterns of Glyma20g35270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g35270
ParalogEvidenceComments
Glyma10g32340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g35270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g210400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g35270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g35270
>Glyma20g35270.2   sequence type=CDS   gene model=Glyma20g35270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTATGCTGACAAAGGAGCATGGTCTGAACCTCAAGGAGACCGAGCTTTGCCTCGGTTTGCCTGGTGGGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAACTTAATCTTCATTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCAGTACAAAAGGTTAGCACTGAGGATGTGGCAGAGAAGACAACAAGCAGCACTGCTAATCCTGGGGCATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTGCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAGGGATCAGAAGCGATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA
Predicted protein sequences of Glyma20g35270
>Glyma20g35270.2   sequence type=predicted peptide   gene model=Glyma20g35270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATMLTKEHGLNLKETELCLGLPGGGGGGGGGGGGGGGEVETPRATGKRGFSETVDLKLNLHSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSTEDVAEKTTSSTANPGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS*






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