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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23530 | AT | Annotation by Michelle Graham. TAIR10: Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867 | SoyBase | E_val: 0 | ISS |
| GO:0008610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclopropane-fatty-acyl-phospholipid synthase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF296 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| PF02353 | PFAM | Cyclopropane-fatty-acyl-phospholipid synthase | JGI | ISS | |
| UniRef100_I1NI07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NI07_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q3L7F1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclopropane fatty acid synthase n=1 Tax=Gossypium hirsutum RepID=Q3L7F1_GOSHI | SoyBase | E_val: 0 | ISS |
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Glyma20g34340 not represented in the dataset |
Glyma20g34340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g201400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g34340.1 sequence type=CDS gene model=Glyma20g34340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGTTGCAGTGGTTGGTAGTGGGATTAGTGGGTTGGCTTCAGCTTATCTTTTGGCCAAAGGGGGAGTGAATGTGGTGCTCTATGAGAAGGAGGATTCGTTGGGAGGACATGCCAAGACTGTGAATGTTGATGGGGTTGATGTTGACCTTGGCTTCATGGTCTTCAATCGGGTCACCTATCCTAACATGTTGGATTTTTTTGAGAATCTTGGAGTTGACATGGAATCATCAGACATGTCTTTTTCTGTTAGTTTAGACAAAGGTCGTGGATGCGAATGGGGAAGCAGAAATGGTTTGTCAAGCTTGTTTGCACAGAAGAAGAATGTACTGAATCCTTACTTCTGGCAAATGATAAGGGAAATTGTCAAGTTCAAAGATGATGTTATTAGCTATCTTGATATGCTTGAGAATAACCCAGATATTGACCGCAACGAGCCTCTAGGGGAATTCATCAAGTCAAGGGGTTACTCCGAATTATTTCAGAAAGCCTATCTTATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTCAGCTCTTTGGCAGACCACAGTGGCTAACTGTAAGATGGCGCTCACAAACTTATGTTAATAAGGTCAAACAAGAGCTTGAGAGGGAAGGTAGTCAAATAATAACTAATCGTGAGGTTCACTTGGTTTCGACGACATCTGAAAAAGGATGTGTTGTGTACTGCAATGATGGTTCTCAAGAAATGTATGATGGATGCATAATGGCAGTGCATGCACCTGATGCCTTGCGATTATTAGGAGATGAAGCAACATATGATGAGCGAAGAATACTCGGAGCTTTTCAATATGCTTACAGTGATATTTTTCTTCATCGTGACAAAAATTTAATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTGGTAGTAACAACAACAAAGTTTGTCTAACATACTGGATCAATATTCTTCAGAATATTAAAGAGACAAGTCAACCCTTTCTTGTAACTCTCAATCCAGACCATATACCAGAAAATACCTTGCTAAAGTGGTCAACTGGCCATCCAGTCCCATCAGTTGCTGCATTCAAAGCTTCATTAGAGCTTGACCATATTCAAGGGAAAAGAAAAATCTGGTTTTCAGGAGCATACCAAGGTTATGGATTTCATGAAGATGGATTTAAGGCTGGCATGATCGCAGCTCATGGCATTCTAGGAAGCTGCTGTGCCCTTCAGACCAACCCAAAACACATGGTACCTTCTTGGAAGGAACTGGGAGCACGCATTTTTGTGACTAGATTCCTGAGTTGCTATATCACTACTGGTTGTTTAATGTTACTGGAAGAGGGAGGAACAATGTTCACCTTTGAGGGAACTGGGAAAAACTGTGGTCTGAAGAGTGTTTTGAGGGTCCACGATCCACAATTTTATTGGAAGGTGATGACACAGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTATTTTGATTCTCATAGCCAACAGAGATTCAAATGCATCCAACTCAAAACTGAAGAAGAATAGGGGTTGGTGGACACCCGTTTTCTTTACGTCTGCTTTGACATCTGCAAAGTTCTTCATGGATCATGTTTCAAGGCGAAATACTCTCACGCAGGCTCGCAGGAACATCTCTAGGCATTATGATCTGAGCAATGACCTCTTTGCGACTTTCTTGGATGAAACAATGACATATTCATGTGCAGTGTTCAAGAATAAAGATGAAGACTTGAAAGATGCACAAAAGAGAAAAATCTCTCTCCTGATTGAAAAAGCTAGAATAGATAAGACACATGAAATTCTTGAGATTGGATGTGGATGGGGAAGTTTAGCCATTGAAGTTGTCAAACAAACCGGCTGCAAATACACTGGTATCACTTTGTCTGAGGAGCAACTGAAACTTGCAGAACAAAGAGTTAAAGATGCTGGGCTTCAGGACCGCATCAATTTTGTTCTATGCGACTATCGCCAATTGCCCAAGACATATAAATACGATAGGATTATATCTTGTGAAATGATAGAAGCTGTTGGTCATGAATACATGGAAGAGTTCTTTGGCTGTTGTGAATCAGTATTGGCGGATAATGGACTTCTTGTTCTCCAGTTCATATCAATCCCGGATGAGCGTTATGATGAATATAGGCGCAGTTCTGATTTTATAAAGGAATATATATTTCCAGGAGGTTGCCTACCCTCTCTAAGTAGGATAACATCTGCCATGGCAGCCACATCCAGACTATGCGTGGAGCACGTTGAAAACATAGGTATTCATTACTACCAAACACTCAGATGCTGGAGAAAAAACTTCTTGAAAAGGCAGAATGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAATTATCAGGTGGTTTTCTCACGCCCTGGTAACGTTCCTGCATTAGGCGATCCATACAAAAGCTAG
>Glyma20g34340.1 sequence type=predicted peptide gene model=Glyma20g34340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVAVVGSGISGLASAYLLAKGGVNVVLYEKEDSLGGHAKTVNVDGVDVDLGFMVFNRVTYPNMLDFFENLGVDMESSDMSFSVSLDKGRGCEWGSRNGLSSLFAQKKNVLNPYFWQMIREIVKFKDDVISYLDMLENNPDIDRNEPLGEFIKSRGYSELFQKAYLIPICGSIWSCSSEGVMSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSQTYVNKVKQELEREGSQIITNREVHLVSTTSEKGCVVYCNDGSQEMYDGCIMAVHAPDALRLLGDEATYDERRILGAFQYAYSDIFLHRDKNLMPQNPAAWSAWNFLGSNNNKVCLTYWINILQNIKETSQPFLVTLNPDHIPENTLLKWSTGHPVPSVAAFKASLELDHIQGKRKIWFSGAYQGYGFHEDGFKAGMIAAHGILGSCCALQTNPKHMVPSWKELGARIFVTRFLSCYITTGCLMLLEEGGTMFTFEGTGKNCGLKSVLRVHDPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLILILIANRDSNASNSKLKKNRGWWTPVFFTSALTSAKFFMDHVSRRNTLTQARRNISRHYDLSNDLFATFLDETMTYSCAVFKNKDEDLKDAQKRKISLLIEKARIDKTHEILEIGCGWGSLAIEVVKQTGCKYTGITLSEEQLKLAEQRVKDAGLQDRINFVLCDYRQLPKTYKYDRIISCEMIEAVGHEYMEEFFGCCESVLADNGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRITSAMAATSRLCVEHVENIGIHYYQTLRCWRKNFLKRQNEILALGFNEKFIRTWEYYFDYCGAGFKSLTLGNYQVVFSRPGNVPALGDPYKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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