Glyma20g34290 - SoyBase

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Report for Sequence Feature Glyma20g34290

Feature Type:	gene_model
Chromosome:	Gm20
Start:	42687763
stop:	42688808
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g34290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64816	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr5:25913487-25913879 FORWARD LENGTH=130	SoyBase	E_val: 3.00E-71	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SWQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWQ9_SOYBN	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma20g34290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g34290 not represented in the dataset	Glyma20g34290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g34290

Paralog	Evidence	Comments
Glyma10g33360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g34290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g200800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g34290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g34290

Limit To All Plant Sequences

>Glyma20g34290.3   sequence type=transcript   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAATAAAATAAAACAGGAATGTTAAATAGAGTGATTGCTGTGAATTGTGATGGAGTGAGAGTTTTAAGCCATCGAAGCACCGCGACGCTGTCTCTCCTGCTATTCTCCGCCGGCGTTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAATTTATTGTTGTGTGTTCAAAATGGGTGAAATTTGGTGGTCCCTTTTGGGGTCGGCGATCCCCGTGGTGGTGGCTGGGCAAGCGTTTCGCCTGAAGAAACGGCGTGCAGAGGAGCAGAGGCTGCAGAGTGGTCGTGGGAGGGAAAGGAATTCCGATGAAATCTTCGTGTGTGAAAGGGTCTGCACTTCAAAGAGGATGCTCAAGAAGCTTGGTTCCTTCTCCAAGGACCCCATTCCTGATACCTGCGTCACCGTTTGCGGCGTTTCCGATGTAGATGCATGTGCTGATGCCTGTGCCCGCACTGTGTGTATCAACCAACATCAAGTCCCTAATTGGAACGACATTTGCCTCAGGAGGTGCCAGAGTGAATGCCTCAAACTCTCTTCTCAGAGTCGGTCCTCGTAGCAGTTGAGTTTTATTTAGTGGCATGTGTGTGTGTGTGTGAGTGTATACTGAGTTTTGGTATTGTGCTTATGTGCTTTGTCTATTCCATGATTTTTACTCTGGAATTCAGAATTTTTTACAACAAATTCAATGGAGATGGAAATGGGGTTTATTCCACTATGTGCTGGTTCATTTTGTGTTCATTGACTTGAGATCTATATGATTCTTTATTTTCCTGCCTCATTTTTGCTTTTGCAAGCATGC

>Glyma20g34290.4   sequence type=transcript   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAATAAAATAAAACAGGAATGTTAAATAGAGTGATTGCTGTGAATTGTGATGGAGTGAGAGTTTTAAGCCATCGAAGCACCGCGACGCTGTCTCTCCTGCTATTCTCCGCCGGCGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAATTTATTGTTGTGTGTTCAAAATGGGTGAAATTTGGTGGTCCCTTTTGGGGTCGGCGATCCCCGTGGTGGTGGCTGGGCAAGCGTTTCGCCTGAAGAAACGGCGTGCAGAGGAGCAGAGGCTGCAGAGTGGTCGTGGGAGGGAAAGGAATTCCGATGAAATCTTCGTGTGTGAAAGGGTCTGCACTTCAAAGAGGATGCTCAAGAAGCTTGGTTCCTTCTCCAAGGACCCCATTCCTGATACCTGCGTCACCGTTTGCGGCGTTTCCGATGTAGATGCATGTGCTGATGCCTGTGCCCGCACTGTGTGTATCAACCAACATCAAGTCCCTAATTGGAACGACATTTGCCTCAGGAGGTGCCAGAGTGAATGCCTCAAACTCTCTTCTCAGAGTCGGTCCTCGTAGCAGTTGAGTTTTATTTAGTGGCATGTGTGTGTGTGTGTGAGTGTATACTGAGTTTTGGTATTGTGCTTATGTGCTTTGTCTATTCCATGATTTTTACTCTGGAATTCAGAATTTTTTACAACAAATTCAATGGAGATGGAAATGGGGTTTATTCCACTATGTGCTGGTTCATTTTGTGTTCATTGACTTGAGATCTATATGATTCTTTATTTTCCTGCCTCATTTTTGCTTTTGCAAGCATGC

Coding sequences of Glyma20g34290

Limit To All Plant Sequences

>Glyma20g34290.2   sequence type=CDS   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAATTTGGTGGTCCCTTTTGGGGTCGGCGATCCCCGTGGTGGTGGCTGGGCAAGCGTTTCGCCTGAAGAAACGGCGTGCAGAGGAGCAGAGGCTGCAGAGTGGTCGTGGGAGGGAAAGGAATTCCGATGAAATCTTCGTGTGTGAAAGGGTCTGCACTTCAAAGAGGATGCTCAAGAAGCTTGGTTCCTTCTCCAAGGACCCCATTCCTGATACCTGCGTCACCGTTTGCGGCGTTTCCGATGTAGATGCATGTGCTGATGCCTGTGCCCGCACTGTGTGTATCAACCAACATCAAGTCCCTAATTGGAACGACATTTGCCTCAGGAGGTGCCAGAGTGAATGCCTCAAACTCTCTTCTCAGAGTCGGTCCTCGTAG

>Glyma20g34290.3   sequence type=CDS   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAATTTGGTGGTCCCTTTTGGGGTCGGCGATCCCCGTGGTGGTGGCTGGGCAAGCGTTTCGCCTGAAGAAACGGCGTGCAGAGGAGCAGAGGCTGCAGAGTGGTCGTGGGAGGGAAAGGAATTCCGATGAAATCTTCGTGTGTGAAAGGGTCTGCACTTCAAAGAGGATGCTCAAGAAGCTTGGTTCCTTCTCCAAGGACCCCATTCCTGATACCTGCGTCACCGTTTGCGGCGTTTCCGATGTAGATGCATGTGCTGATGCCTGTGCCCGCACTGTGTGTATCAACCAACATCAAGTCCCTAATTGGAACGACATTTGCCTCAGGAGGTGCCAGAGTGAATGCCTCAAACTCTCTTCTCAGAGTCGGTCCTCGTAG

>Glyma20g34290.4   sequence type=CDS   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAATTTGGTGGTCCCTTTTGGGGTCGGCGATCCCCGTGGTGGTGGCTGGGCAAGCGTTTCGCCTGAAGAAACGGCGTGCAGAGGAGCAGAGGCTGCAGAGTGGTCGTGGGAGGGAAAGGAATTCCGATGAAATCTTCGTGTGTGAAAGGGTCTGCACTTCAAAGAGGATGCTCAAGAAGCTTGGTTCCTTCTCCAAGGACCCCATTCCTGATACCTGCGTCACCGTTTGCGGCGTTTCCGATGTAGATGCATGTGCTGATGCCTGTGCCCGCACTGTGTGTATCAACCAACATCAAGTCCCTAATTGGAACGACATTTGCCTCAGGAGGTGCCAGAGTGAATGCCTCAAACTCTCTTCTCAGAGTCGGTCCTCGTAG

Predicted protein sequences of Glyma20g34290

Limit To All Plant Sequences

>Glyma20g34290.2   sequence type=predicted peptide   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEIWWSLLGSAIPVVVAGQAFRLKKRRAEEQRLQSGRGRERNSDEIFVCERVCTSKRMLKKLGSFSKDPIPDTCVTVCGVSDVDACADACARTVCINQHQVPNWNDICLRRCQSECLKLSSQSRSS*

>Glyma20g34290.3   sequence type=predicted peptide   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEIWWSLLGSAIPVVVAGQAFRLKKRRAEEQRLQSGRGRERNSDEIFVCERVCTSKRMLKKLGSFSKDPIPDTCVTVCGVSDVDACADACARTVCINQHQVPNWNDICLRRCQSECLKLSSQSRSS*

>Glyma20g34290.4   sequence type=predicted peptide   gene model=Glyma20g34290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEIWWSLLGSAIPVVVAGQAFRLKKRRAEEQRLQSGRGRERNSDEIFVCERVCTSKRMLKKLGSFSKDPIPDTCVTVCGVSDVDACADACARTVCINQHQVPNWNDICLRRCQSECLKLSSQSRSS*

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