SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04520 | AT | Annotation by Michelle Graham. TAIR10: plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307 | SoyBase | E_val: 1.00E-138 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0010497 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport | SoyBase | N/A | ISS |
| GO:0046739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spread of virus in multicellular host | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF83 | Panther | RECEPTOR SERINE/THREONINE PROTEIN KINASE-RELATED | JGI | ISS | |
| PF01657 | PFAM | Domain of unknown function DUF26 | JGI | ISS | |
| UniRef100_G7I3U3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich repeat secretory protein n=1 Tax=Medicago truncatula RepID=G7I3U3_MEDTR | SoyBase | E_val: 3.00E-149 | ISS |
| UniRef100_I1NHZ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHZ5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma20g34230 not represented in the dataset |
Glyma20g34230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g200200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g34230.2 sequence type=transcript gene model=Glyma20g34230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGTTCTCATTCTCTTCAAATAATAAAAAATTGTTCACCATTTTCAAAAAACTCATACCCCTTTTTAAAAAACTCATTTTTCTTTTTAGTATTAACCAGTTATAGAGAGAGAAAGAGAGTACAGCTAGTGCACATCTACATAGGCAATTGCATTTCAATTTCATTACTACATTGTGCTATGCTATCCCATCCAAAGGAAAGTGAATCCCAAGGACACAAAAACCAGAACGTAGAGTCACTCCACCACAGCAGAGCACAGCAACCCTCAAATCCCTTTCCTTTTTCCCTCCTGATTTAGCAAAAAAAGCAGAAGAAAAATCCAAAGTTTAACCTCAACCCTCGATTCTTTCTTCTTTTCCTTAGTCAGACTCTCTCTGAATCTGATATCACCACACACACACAAACACTTAAAGGTTTTTCCTTTCCCCCCAAAATTGCCATGATTTGATCCCTCTCAGCTGTCACCACCACACACACCCAAATGGGGTTTCCCAGAAAATCACTATTCCTTCTTCTGTTCCTGATTCTCTTCACAAACCTTGCTGAATCTGCTTCTGACTACACCACCTTGGTCTACAAGGGTTGCTCCAAGGAAACATTCACAGATCCAAATGGGGTATACTCACAAGCCCTTTCATCACTCTTTGGCTCATTGGTCTCACAATCCACCAAAGCCAAGTTCTTTAAGGCCACTGCAGGGAGTGGCCAATCCTCCATGACTGGGCTCTTCCAATGCAGAGATGACCTCTCCAACTCCGACTGCTACAACTGCGTGAGCAGGCTCCCGGTCCTGTCCGACAAGCTCTGCGGCAAGACCACCGCCGCCAGAATCCAGCTCCTGGGTTGCTACATGCTGTACGAGGTTGTAGGGTTCACGCAAATCTCGGGGATGCAGATTTTGTACAAGACCTGTGGGGGAACCAACGCTGCTGGGAGAGGGTTTGAGGAGAGGAGGGACACTGCTTTCTCTGTGATGGAGAATGGGGTGGTCACTGGCCATGGCTTCTATGCCACCAGCTACCAGTCTTTGTATGTGATGGGGCAATGTGAGGGAGATGTTGGTGATTCTGATTGTGGGGAGTGTGTCAAAAGTGCTGTCCAGAGGGCTCAGGTTGAATGTGGAAGCTCCATTTCAGGCCAGGGCAAAATACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGATTATTGACAGTGGAAGATGGTTGATTGAGGAGGCATAATTCTTCATGCAGTGGATTATTATTTCTATATATATAGCTTTTGGATGAAAGAGATGGAAAATTTCTGGTAATTAGACTTTAGCAGATAGGGAAAGAATCTGGGACGGTTAAAATGTGGGAACTACTAATTCTTGTAGTTAGGTAAGGAGATTTTGTTGTGAAGAACGGTGTAATTAGCTCATGAAAGTGAGAATTTTTTTACATTACAAGGGGAAAAAAAACAAATATACCTAGAGGAATGAATGTTTGTCATCCTGAATGGGTGAAAATTTTGTGCCTATTTCTTTATCCATGTGGATGATTCTCTTTTCC
>Glyma20g34230.1 sequence type=CDS gene model=Glyma20g34230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTTCCCAGAAAATCACTATTCCTTCTTCTGTTCCTGATTCTCTTCACAAACCTTGCTGAATCTGCTTCTGACTACACCACCTTGGTCTACAAGGGTTGCTCCAAGGAAACATTCACAGATCCAAATGGGGTATACTCACAAGCCCTTTCATCACTCTTTGGCTCATTGGTCTCACAATCCACCAAAGCCAAGTTCTTTAAGGCCACTGCAGGGAGTGGCCAATCCTCCATGACTGGGCTCTTCCAATGCAGAGATGACCTCTCCAACTCCGACTGCTACAACTGCGTGAGCAGGCTCCCGGTCCTGTCCGACAAGCTCTGCGGCAAGACCACCGCCGCCAGAATCCAGCTCCTGGGTTGCTACATGCTGTACGAGGTTGTAGGGTTCACGCAAATCTCGGGGATGCAGATTTTGTACAAGACCTGTGGGGGAACCAACGCTGCTGGGAGAGGGTTTGAGGAGAGGAGGGACACTGCTTTCTCTGTGATGGAGAATGGGGTGGTCACTGGCCATGGCTTCTATGCCACCAGCTACCAGTCTTTGTATGTGATGGGGCAATGTGAGGGAGATGTTGGTGATTCTGATTGTGGGGAGTGTGTCAAAAGTGCTGTCCAGAGGGCTCAGGTTGAATGTGGAAGCTCCATTTCAGGCCAGGTCTATTTGCACAAGTGTTTCATTAGTTATAGTTATTACCCTAATGGGGTTCCAGGAAGACACTCTTCTTCAGCTTCATCATCTTCCAATTCCTATTCTTCTTCTTCTTCTTCTTCTGGGCAAAATACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGATTATTGA >Glyma20g34230.2 sequence type=CDS gene model=Glyma20g34230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTTCCCAGAAAATCACTATTCCTTCTTCTGTTCCTGATTCTCTTCACAAACCTTGCTGAATCTGCTTCTGACTACACCACCTTGGTCTACAAGGGTTGCTCCAAGGAAACATTCACAGATCCAAATGGGGTATACTCACAAGCCCTTTCATCACTCTTTGGCTCATTGGTCTCACAATCCACCAAAGCCAAGTTCTTTAAGGCCACTGCAGGGAGTGGCCAATCCTCCATGACTGGGCTCTTCCAATGCAGAGATGACCTCTCCAACTCCGACTGCTACAACTGCGTGAGCAGGCTCCCGGTCCTGTCCGACAAGCTCTGCGGCAAGACCACCGCCGCCAGAATCCAGCTCCTGGGTTGCTACATGCTGTACGAGGTTGTAGGGTTCACGCAAATCTCGGGGATGCAGATTTTGTACAAGACCTGTGGGGGAACCAACGCTGCTGGGAGAGGGTTTGAGGAGAGGAGGGACACTGCTTTCTCTGTGATGGAGAATGGGGTGGTCACTGGCCATGGCTTCTATGCCACCAGCTACCAGTCTTTGTATGTGATGGGGCAATGTGAGGGAGATGTTGGTGATTCTGATTGTGGGGAGTGTGTCAAAAGTGCTGTCCAGAGGGCTCAGGTTGAATGTGGAAGCTCCATTTCAGGCCAGGGCAAAATACAGGGAAGACAGTGGCTATAA
>Glyma20g34230.1 sequence type=predicted peptide gene model=Glyma20g34230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFPRKSLFLLLFLILFTNLAESASDYTTLVYKGCSKETFTDPNGVYSQALSSLFGSLVSQSTKAKFFKATAGSGQSSMTGLFQCRDDLSNSDCYNCVSRLPVLSDKLCGKTTAARIQLLGCYMLYEVVGFTQISGMQILYKTCGGTNAAGRGFEERRDTAFSVMENGVVTGHGFYATSYQSLYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVYLHKCFISYSYYPNGVPGRHSSSASSSSNSYSSSSSSSGQNTGKTVAIIVGGAAGVAFLVICLMFARSLKKKRDDY* >Glyma20g34230.2 sequence type=predicted peptide gene model=Glyma20g34230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFPRKSLFLLLFLILFTNLAESASDYTTLVYKGCSKETFTDPNGVYSQALSSLFGSLVSQSTKAKFFKATAGSGQSSMTGLFQCRDDLSNSDCYNCVSRLPVLSDKLCGKTTAARIQLLGCYMLYEVVGFTQISGMQILYKTCGGTNAAGRGFEERRDTAFSVMENGVVTGHGFYATSYQSLYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQGKIQGRQWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
