Glyma20g34170 - SoyBase

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Report for Sequence Feature Glyma20g34170

Feature Type:	gene_model
Chromosome:	Gm20
Start:	42617239
stop:	42619167
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g34170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04540	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:1237256-1239061 FORWARD LENGTH=601	SoyBase	E_val: 2.00E-86	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7I2P8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein 12B n=1 Tax=Medicago truncatula RepID=G7I2P8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DC24	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DC24 related cluster n=1 Tax=unknown RepID=UPI000233DC24	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g34170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g34170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g199700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g34170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g34170

Limit To All Plant Sequences

>Glyma20g34170.2   sequence type=CDS   gene model=Glyma20g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAAATCTTGGCACCGTTCCAGTTACTGGAACTGAACGTGATTTCCGCCCAGGACCTGGCTCCTCTGGGTCGCAACATGCGTACCTACGCTGTCTCCTGGGTTCACCCGGACCGGAAGCTCTCCACACGCGTCGACTCTGAGGGCCACACCAACCCAACTTGGAATGACAAGTTCGTCTTCCGCGTCGACGAAGAGTTTCTCTACTCCGACACCTCCGCCATCATGATCGAGATCTACGCGCTTCATTGGTTCAAGGACATCCACGTCGGCACCGTCCGCGTCCTCGTCGGAAACCTCGCCCCTCCTCCCTCCAAACCCTTCCACAACAACCGCACTCCGCTCGGCATGCGCTTCATCGCCCTCCAGGTTCGCCGCCCCTCCGGCAGGCCACAGGGGATTCTAAACATTGGCTTCACCGTCCTCGACAGCTCCATGCGCAGCATGCCGCTCTACACTCACAACGCCTCGGCCGTCGGCTACCGCCACCTCATGGGTGAGAAGGACGCTTACGACAGCCACAACCACCTCAGCCCCCGCATCCGCCCCACTGCCGTCGCAACTCCCATGCCTGAGCTTCGCCGGACCAAGAGCGACACCAGCTCCATGCTCGGCGCCGCTGAAGCCGTGGCGCGCCACCACCGAGCCATGGCTGTACGAGCCGACTCCACCATTTCGGGATCCGAGGTTAGCGTTAAAAAGAAGAAGGGGAAGAAGAAGAAAACGAAAGCCAAGAAGAGTAGCTCGGTTGTGAGTAGCGTCAACGAAACGAACTCGGTCCTCAGCGACACCGTTTTGCCGTGGAAGGTTAAAAGCGGAAAGGCAAGTCCCGATGATATTGTCCACGTCCACAACAACGTCGTTGAGGAGGTTCATAATGATAATGACGATGATAACGAGAACGCACATTCAACCGTTAACTCCGTTTCTGAAATTGCCACCAGCGAAACCGACGCTGATGAAGGACAACAACATGTTCATGTTAATCACGTTCAATACGAAGTTCGAGCCTCCCCCAAACCGCAGTTTCGAAACTCTCCGGCACCACAATTTAAGAACTCTCCGGCACCACAATTTAAGAACTCTCCGGCACCGCAATTTAAAAATTCTCCGGCACCGCACTTTAAGAATTCTCCGGCACCACAATATAAGAATTCTCCTGCACCACGGTATATGAACTCTCCGAAGCCGCAGTTTAAGAATTCTCCGGCGCCGCAATTTAAGAATTCGCCTGCACCGCAGTTTAAGAACTCTCCTACGCCACAGTACAAGAGTTCTCCGGTGCTGCAGTATATGAACTCGCCGAAGCCGCAGTTTAAGAATTCTCCGATGCCGCAGTATATGCCAACTCCAAAGCCGCAGTTTCGGAACTCGCCGGCAGTGTCGAAGTTCAACCCGGCGGTGGGGTTCAACGGGTCGCAGAGGGGGACGCCAATGCATCCATTCGGGAAAGTGAACGGTGCAGGGTTTGAGTACATGACACCGCGGAGGTCAAACTTGGCCAACATGGGGCATGTGGTGATAACGGAGTCGGAGCTGGGGCCGTCGCCATCGGAGGTGGCGGCGGCGATCGCGAGGAAGCCGGTGATCGACGAGGGGGAGAATTCAACGGTGGGAGGATGGAGCTTGGACGCGGAGAGCGTGGAGGGGCTGCAGTCGAAGCTGGAGAGGTGGCGGACGGACTTGCCGCCGGTGGTCGATCGCGGCGAGGTCTCGAGCTACCCAACGACGAGCACCACCAAGACGAGCCGGCACTCGCGGAGGCACACCGACGGCGGGAGTACTGGGAGTGGCTTGTTCTCATGCTTTAGTAACATATGTGGTGTTGAGTGCTACGTTGGTTGCGGCGGTGACCCTAAAGGAAAGAAGAACCGCATCCGCAGTCGCCGCACTCCCTCAGCGGATGACAGTTCCAGTCTTCTCTAA

Predicted protein sequences of Glyma20g34170

Limit To All Plant Sequences

>Glyma20g34170.2   sequence type=predicted peptide   gene model=Glyma20g34170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQILAPFQLLELNVISAQDLAPLGRNMRTYAVSWVHPDRKLSTRVDSEGHTNPTWNDKFVFRVDEEFLYSDTSAIMIEIYALHWFKDIHVGTVRVLVGNLAPPPSKPFHNNRTPLGMRFIALQVRRPSGRPQGILNIGFTVLDSSMRSMPLYTHNASAVGYRHLMGEKDAYDSHNHLSPRIRPTAVATPMPELRRTKSDTSSMLGAAEAVARHHRAMAVRADSTISGSEVSVKKKKGKKKKTKAKKSSSVVSSVNETNSVLSDTVLPWKVKSGKASPDDIVHVHNNVVEEVHNDNDDDNENAHSTVNSVSEIATSETDADEGQQHVHVNHVQYEVRASPKPQFRNSPAPQFKNSPAPQFKNSPAPQFKNSPAPHFKNSPAPQYKNSPAPRYMNSPKPQFKNSPAPQFKNSPAPQFKNSPTPQYKSSPVLQYMNSPKPQFKNSPMPQYMPTPKPQFRNSPAVSKFNPAVGFNGSQRGTPMHPFGKVNGAGFEYMTPRRSNLANMGHVVITESELGPSPSEVAAAIARKPVIDEGENSTVGGWSLDAESVEGLQSKLERWRTDLPPVVDRGEVSSYPTTSTTKTSRHSRRHTDGGSTGSGLFSCFSNICGVECYVGCGGDPKGKKNRIRSRRTPSADDSSSLL*

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