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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17740 | AT | Annotation by Michelle Graham. TAIR10: Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009543 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0031977 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| PTHR18868 | Panther | SERINE PROTEASE | JGI | ISS | |
| PTHR18868:SF10 | Panther | SERINE PROTEASE | JGI | ISS | |
| PF00595 | PFAM | PDZ domain (Also known as DHR or GLGF) | JGI | ISS | |
| PF03572 | PFAM | Peptidase family S41 | JGI | ISS | |
| UniRef100_B9RWT1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl-terminal-processing protease, putative n=1 Tax=Ricinus communis RepID=B9RWT1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DC20 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC20 related cluster n=1 Tax=unknown RepID=UPI000233DC20 | SoyBase | E_val: 0 | ISS |
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Glyma20g34110 not represented in the dataset |
Glyma20g34110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33481 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g199000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g34110.2 sequence type=transcript gene model=Glyma20g34110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTTAATGTTCTTCAAATTTTATTTTATTTCAAAATAAACGATAATGTAAAGCATAAAGGGAAAAAAGTGAAGGGTTGAGCCAGAGGTGGGGCACCCTTCTCTCTAGTCTTCCATGGAGTTCGTTGCAAGCTCTGTGAACGCTTCTTTTTCTCTTCGTTGCTCTCACAATACCCCTTTCCCTGCCATCTCCATTCCTCCGGTGTCACAGTGGAAGTGTTTTTCGTTAAGGGTAATAGAATCTCGGTTTCCATTGGCACATAGAAGGAAGAAAGGTCTTGGTTCTAGAAATAGGGATTCTGGGAAAGAATTTTCAATTGGGGTGGTGCCACGAATAAGCAGCATCTGTTATCCTCAGTGTGGCTATTTTCCATCAAGTGGGGGTTTCACTGCCAAAAGGAGGAAATGTAATAGTCTCCTAAGACTGAAGGATTGTTCAGAAAACATAAGACAACATGCTTCTATTTTGTTTGTGCGGCTGGTTACTGGAGTGATGTTGGTCATGGCTGTTTCTTTGGCTTCTAGTGAGCCATCCTGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAGATGCACTACGCAATGAACCAATGAACAATCGAGATGAGACATATACAGCAATAAGAAAGATGCTTGCCACATTGGATGATCCATTCACTAGATTTTTGGAGCCTGAAAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGTTATCAATAGGCTACCCTACCAAAGCTGACATGCAACCTGGTGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTCGTCTGGAGATGTTATCCTGGCTATTGATGATACAAACACAGAAAACATGGGACTATATGATGCAGCTGAACGTCTACAGGGACCGGAAGGAAGCTCTATAGCTTTGACCATTCGTAGTGGTTCGGACATAAAACACCTGGATTTGACGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCTTTCAACCAAAAGGCATCTAGTGCTATCAAAGAAGCAATCAATACATTAAGGAGTGATAATGTTAATGCATTTGTTTTGGATCTTAGAGATAATAGTGGTGGTCTTTTCCCAGAAGGAATTGAGATTGCCAAAATTTGGTTGGACAAAGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGGTAAACAAGGGAACTGCAAGTGCAAGCGAAATATTAGCTGGTGCATTGAAAGATAATAAACGAGCCGTATTGTTTGGAGAGCCAACATTTGGAAAAGGGTAGTTACTTTGGTTTCAGTTCAAACCCAACAAGCTAAAATTTACGTCATTTTCCTAATATGAGCTATACATATGCAGGAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGGTTTGCTCTTGATTCTCCACCTCCTAAACTGGTTTCGTCCGCTAACACCCGGCATTTGCATGTAGGTTGGTGTCATTCCTGACCATCCTCTACCAATATCATTTCCCAAGGATGAGGATGCATTTTGCAATTGCCTCCAGGATCCTGCGTCTTCTTGCTACGTCAATAGGATCCAGCTTTTTTCAAAATCATGATTTTTTGGGGGTTGTTGTACATTAATTCTTTGTAAAATATTACTATTCATTAACAGAACATAATGTTTTCTTTGTTTTGGGGGCTTACTGATTGAGCAAGGGAACATTGTTGCCACAAATATTTGGATGTATATGAAAACCAAAGACTAGAGATTTTTGTTCCTGAAAATCATCGGAACATGGGCAAAGAAAACCAAAACAAATGGATGTACCTGAATTAGAATTGTTCGCAATTGAGATGTCGGTGAATGTCAATAAGTACTGCTGAATTTCTCCTTT
>Glyma20g34110.1 sequence type=CDS gene model=Glyma20g34110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGTTGCAAGCTCTGTGAACGCTTCTTTTTCTCTTCGTTGCTCTCACAATACCCCTTTCCCTGCCATCTCCATTCCTCCGGTGTCACAGTGGAAGTGTTTTTCGTTAAGGGTAATAGAATCTCGGTTTCCATTGGCACATAGAAGGAAGAAAGGTCTTGGTTCTAGAAATAGGGATTCTGGGAAAGAATTTTCAATTGGGGTGGTGCCACGAATAAGCAGCATCTGTTATCCTCAGTGTGGCTATTTTCCATCAAGTGGGGGTTTCACTGCCAAAAGGAGGAAATGTAATAGTCTCCTAAGACTGAAGGATTGTTCAGAAAACATAAGACAACATGCTTCTATTTTGTTTGTGCGGCTGGTTACTGGAGTGATGTTGGTCATGGCTGTTTCTTTGGCTTCTAGTGAGCCATCCTGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAGATGCACTACGCAATGAACCAATGAACAATCGAGATGAGACATATACAGCAATAAGAAAGATGCTTGCCACATTGGATGATCCATTCACTAGATTTTTGGAGCCTGAAAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGTTATCAATAGGCTACCCTACCAAAGCTGACATGCAACCTGGTGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTCGTCTGGAGATGTTATCCTGGCTATTGATGATACAAACACAGAAAACATGGGACTATATGATGCAGCTGAACGTCTACAGGGACCGGAAGGAAGCTCTATAGCTTTGACCATTCGTAGTGGTTCGGACATAAAACACCTGGATTTGACGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCTTTCAACCAAAAGGCATCTAGTGCTATCAAAGAAGCAATCAATACATTAAGGAGTGATAATGTTAATGCATTTGTTTTGGATCTTAGAGATAATAGTGGTGGTCTTTTCCCAGAAGGAATTGAGATTGCCAAAATTTGGTTGGACAAAGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGGTAAACAAGGGAACTGCAAGTGCAAGCGAAATATTAGCTGGTGCATTGAAAGATAATAAACGAGCCGTATTGTTTGGAGAGCCAACATTTGGAAAAGGGAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGGTTGGTGTCATTCCTGACCATCCTCTACCAATATCATTTCCCAAGGATGAGGATGCATTTTGCAATTGCCTCCAGGATCCTGCGTCTTCTTGCTACGTCAATAGGATCCAGCTTTTTTCAAAATCATGA >Glyma20g34110.2 sequence type=CDS gene model=Glyma20g34110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGTTGCAAGCTCTGTGAACGCTTCTTTTTCTCTTCGTTGCTCTCACAATACCCCTTTCCCTGCCATCTCCATTCCTCCGGTGTCACAGTGGAAGTGTTTTTCGTTAAGGGTAATAGAATCTCGGTTTCCATTGGCACATAGAAGGAAGAAAGGTCTTGGTTCTAGAAATAGGGATTCTGGGAAAGAATTTTCAATTGGGGTGGTGCCACGAATAAGCAGCATCTGTTATCCTCAGTGTGGCTATTTTCCATCAAGTGGGGGTTTCACTGCCAAAAGGAGGAAATGTAATAGTCTCCTAAGACTGAAGGATTGTTCAGAAAACATAAGACAACATGCTTCTATTTTGTTTGTGCGGCTGGTTACTGGAGTGATGTTGGTCATGGCTGTTTCTTTGGCTTCTAGTGAGCCATCCTGGGCCCTGTCTGAAGAGAATCTCCTCTTTCTGGAGGCATGGAGAACAATTGACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAGATGCACTACGCAATGAACCAATGAACAATCGAGATGAGACATATACAGCAATAAGAAAGATGCTTGCCACATTGGATGATCCATTCACTAGATTTTTGGAGCCTGAAAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGTTATCAATAGGCTACCCTACCAAAGCTGACATGCAACCTGGTGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTCGTCTGGAGATGTTATCCTGGCTATTGATGATACAAACACAGAAAACATGGGACTATATGATGCAGCTGAACGTCTACAGGGACCGGAAGGAAGCTCTATAGCTTTGACCATTCGTAGTGGTTCGGACATAAAACACCTGGATTTGACGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCTTTCAACCAAAAGGCATCTAGTGCTATCAAAGAAGCAATCAATACATTAAGGAGTGATAATGTTAATGCATTTGTTTTGGATCTTAGAGATAATAGTGGTGGTCTTTTCCCAGAAGGAATTGAGATTGCCAAAATTTGGTTGGACAAAGGGGTGATTGTGTATATTTGTGATAGTCGTGGTGTTCGAGATATACTTGATACAGATGGAAGTAGTGCACTAGCAACTTCAGAACCCCTGGTTGTACTGGTAAACAAGGGAACTGCAAGTGCAAGCGAAATATTAGCTGGTGCATTGAAAGATAATAAACGAGCCGTATTGTTTGGAGAGCCAACATTTGGAAAAGGGTAG
>Glyma20g34110.1 sequence type=predicted peptide gene model=Glyma20g34110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFVASSVNASFSLRCSHNTPFPAISIPPVSQWKCFSLRVIESRFPLAHRRKKGLGSRNRDSGKEFSIGVVPRISSICYPQCGYFPSSGGFTAKRRKCNSLLRLKDCSENIRQHASILFVRLVTGVMLVMAVSLASSEPSWALSEENLLFLEAWRTIDRAYIDKSFNGQSWFRYREDALRNEPMNNRDETYTAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGLSIGYPTKADMQPGGLVVISASPGGPAYRAGVSSGDVILAIDDTNTENMGLYDAAERLQGPEGSSIALTIRSGSDIKHLDLTREKVSLNPVKSRLCKLPASGNDSPTIGYIKLTSFNQKASSAIKEAINTLRSDNVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDILDTDGSSALATSEPLVVLVNKGTASASEILAGALKDNKRAVLFGEPTFGKGKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPISFPKDEDAFCNCLQDPASSCYVNRIQLFSKS* >Glyma20g34110.2 sequence type=predicted peptide gene model=Glyma20g34110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFVASSVNASFSLRCSHNTPFPAISIPPVSQWKCFSLRVIESRFPLAHRRKKGLGSRNRDSGKEFSIGVVPRISSICYPQCGYFPSSGGFTAKRRKCNSLLRLKDCSENIRQHASILFVRLVTGVMLVMAVSLASSEPSWALSEENLLFLEAWRTIDRAYIDKSFNGQSWFRYREDALRNEPMNNRDETYTAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGLSIGYPTKADMQPGGLVVISASPGGPAYRAGVSSGDVILAIDDTNTENMGLYDAAERLQGPEGSSIALTIRSGSDIKHLDLTREKVSLNPVKSRLCKLPASGNDSPTIGYIKLTSFNQKASSAIKEAINTLRSDNVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDILDTDGSSALATSEPLVVLVNKGTASASEILAGALKDNKRAVLFGEPTFGKG*
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