SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09670 | AT | Annotation by Michelle Graham. TAIR10: Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726 | SoyBase | E_val: 5.00E-58 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR22981 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22981:SF12 | Panther | CYTOKINE LIKE NUCLEAR FACTOR | JGI | ISS | |
| PF00855 | PFAM | PWWP domain | JGI | ISS | |
| UniRef100_G7I2L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase ATM n=1 Tax=Medicago truncatula RepID=G7I2L8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NHX6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHX6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g34040 not represented in the dataset |
Glyma20g34040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g34040.3 sequence type=transcript gene model=Glyma20g34040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCACACACCACTATTTTATATTTCTCCAATTTTCCAAAATCTAGTGCCCACGACCACCAAAATTCGAGCAAGCTTTCTCTCCCCTAGGATCCAACCTGAATCCACGTTGACCCATATTGAAAGCATGGATGGTGAAAGAGAAACCCTAGAGGAGCCTATAGAAAAGGAGGGATCTTTGGTTGGGGATGGGAAGGACCTAAAGGTGGGGGTTTTGGGTTCTGATTTGTGCATAGAAGGTGTTGTTTGCACTCGTGAGCGTGATGCTGAGCTGAATGGTGATGTGGGTTTTGATGGATCAAAAGAGGAGGGTAAAGGTGTGGATCCTTCAGGTGGAGAAGCTGCTGAGGCTCTTGGTGAGGATTCTCAAGTTTTGAGATCCTTAGAAAGTAAGAGCGTGAATGAGATTGCTGAGTTAGATGGAAATGAAGCTACCTTGAAAACATTGGATGAGCAGAAGAACATTGATGACAAGGAGGTCAATAAGTTAGTGGAGAAAGAAGCAATTAGTGATGTTATTCAGGCTGAGCCAGATGTTACGCAAAGCATTAAAGAACATGCTGGGGATCTTGGTGAAGGTTCTCAAGTTGTGAGGTCCTTAGAAGGTAAGAGTGAGAATGAGACTGCTGAGTTGGATGGAAATGATGTCACCTTGAAAACATTGGATGAGCAGAAGAACATTGATATTCAGGTTGAGTCGGATATTAGTCAAAGCATTGAAGGGCAAGCTGGCATTGCTGAGCAGGTTGGTTCACAAGGAGAGCAGGAAATTGAAGGTGAAAAACTTGATGATGCTAAACAGCGAAAACCAACACATGGAAGAGTTGCAAAGCATGTGTCAAATAAAAGTTCAGGAAACATTCTTCAAGCAAGTTATCAGCTGCCAAAGGAAAAATCTGAGTTTTCGTGTATGATATGGTTTGGGGTAAGGTGAAAAGCCATCCGTGGTGGCCAGGGCAGATATTTGATCCCTCGGATTCGTCTGTGGAGGCAAAGAAGCATTTAAAAAAGGACCGCCATTTGGTTGCGTATTTTGGGGATAGAACATTTGCTTGGAATGAGTCATCTCAGCTAAAGCTCTTTAGGACTCATTTCTCTAATGTTGTAAAGCAGAGCAATTCAGATGCATTTCAGAATGCAGTAGATTGTGCTTTGGATGAAGTCGGGAGATGTGCAGAATTTGGGTTAGCATGTTCCTGCATACCTAAAGATACTTATGACGAGATTAAGCTCCAAACTGTTCAAAACACTGGGATTCGAGAAGAACTAAGTTTCACACGCAGAGTGGATGAATCTTTAAATGCTAGTTCCTTTTCACCTGAGAACATTTTGGAATACTTGAAAACTCTATCCGAGTTTCCAACTGGTGGCTTTGATCGATTGGAGCTTTTAATTGCTAAGGCTCAGTTGCTTGCTTTCTATCGTTTGAAGGGTTACTCTTGCTTGCCTGAGTTGCAATATTGTGGAGTTGTGGATAATGACACTGATGCCTTCTTAATTAAGGACTTAATTAAGGGCTCTGATAAAAGTTTGAGTGAAGTTAATAAGCATGCAACTCATGCGAGTAAAAAAGGTCAAACTGGTGCTGGAAATTTGAAGACAGCAAATGGCTCCTGTCTCAAACGCAAACATAATTTGAAAGATGATTTATATCCAGAAAAGAAGAAAATAATTTTGTCAGAAGCAGCAGGTGGGACTCCAGATTCTTCACTTGGTAATTATCAGCCAGGGATGAAAGATAGGAGAAAAACAATTTCCCTTGCCAAAGTTTCAAATACCATAAATCAATCATTTAAGATTGGTGAACGTATTCTAAGGGTTGCTAATCAACTTACTGGACCACCCTCCTCTATGTTGAAGTGTTCTGGAGACAGGACTCAAATGGAAGATGGAAGTGCTGATGGTTTTCCAGGGAATGGATCTGATGTCTTCTCCCCTAATCCTGAGAAGACTCAGAAGTCAAGCTTCACTGTTCCAACGGAATATTCATCTCTAGATGATTTGCTACATTTACTTCAGTGGGTAGCACATGAACCCCTGGGAGATTATAGTTCCCTGAATGTTATAGTGAGCTTCTTCTCTGATTTCAGGAATTCAATAATCGTGGCCAATGATTCTGGAAAAGAAAATTTTCCTACAAAGAAAGTTGGTGCTAAAAGGAATAAACGACCTGTGGGTGGATCACCTGAAACATTTGAATTTGATGATCTGAGTCATACACATTGGACTGACATGGGCATCCAGAGTGGTTCTGAAAAACAGCAGTCACAGAGAAGCAGCAGAAGAGACTATCAACATGCCCCTGCTGAGCCAGAAAAACCTTTTATAGTTTATACTCGTAGGTCCTATTCCAGGAAACAATGTTCTGACAGCAATCATGTTGCAGTTCCTGAAAAGCATTCTGGTTGTGCAGATGAGAATTCCCCAGTTGAGCTTGTTTTAAACTTTGCTGAGCTGGATTCTGTTCCCTCAGAAATGCGCCTAAATAAGATTTTTAGGCGATTTGGACCTCTAAATGAATCTGAAACAGAAGTTGATAGAGGGAGCAGCCGGGCTAGAGTGGTTTTTAAGAAGTGTGTTGATGCAGAGGTTGCTTTCAGTAGTGCTAAAAAGTTCAACATATTTGGATCAGTTCTTGTAAATTACAAGCTTAACCATACTCCAAGTACATTATCCAAAGCTTCATCTCTTGCCACAACTCAAGACCAGGAGAACGGAAATGCATCTTGATCCCTCCAATTCTGAACTTAATATGATCTAATTGTTGGGTCATAATTATTTTAGTACCACTAGAATGTTTTTAAGGAAGCATGTCAGCCAACCCACAATCTAGAACAGTGAAGATAAGGAGGAGGATGTATCAAACATTCAGCTTTCAATCTCACCACTTCAAGACAAAAGGAAATGATTTTGCACTTTTGCAGCAAACATCTGAGACTACTAAAGAAAGAAATATGGAAGAAAACAAGGGTATTACTTACTTGAGCAAATGTGCTTAGTGATTTTTAGCTATCACAATACCAATGTATCCTTTGTTAGCTCTATTTACTTAGATATATGTGTCATTACAAAATGAAAGTTTTCAGTCTGGGAGCAGTAGCATTAAAAGCATTAGTTAGATCCATTTGGACATTCAATTGTATATTGGCTTTAAAATGTTGATAAGTAAACGGTCCTGTTTCTTTGGTTTAGCTAGTTTGGGGCCTCCTAATTTAATTGTCACAGTGAACTATAGAGTTGAAAATACTGAAACTTCGGTTTTTGTAAGATTTTCCTGTTTGTTAGTGTTTGCACTGTGCATCTTTTGTTTGATTTGGCACAATTTTGACATGTACTTCAAATGTGATTCTTTCTAGCACCAACCCCATATGATAAGAACAATTGTCAGATTCTATCGTGGAAAACACAGGAATTTGATGAGTGAGATTCTGAGTAATTGTTTATGTAATTTTCTTCTGTTTGAAAAAATTATTCATTGTAATAATGAGTTATTATTGATATTGACACATATGAGATCGCTAATCCTTGC
>Glyma20g34040.2 sequence type=CDS gene model=Glyma20g34040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGGGGTAAGGTGAAAAGCCATCCGTGGTGGCCAGGGCAGATATTTGATCCCTCGGATTCGTCTGTGGAGGCAAAGAAGCATTTAAAAAAGGACCGCCATTTGGTTGCGTATTTTGGGGATAGAACATTTGCTTGGAATGAGTCATCTCAGCTAAAGCTCTTTAGGACTCATTTCTCTAATGTTGTAAAGCAGAGCAATTCAGATGCATTTCAGAATGCAGTAGATTGTGCTTTGGATGAAGTCGGGAGATGTGCAGAATTTGGGTTAGCATGTTCCTGCATACCTAAAGATACTTATGACGAGATTAAGCTCCAAACTGTTCAAAACACTGGGATTCGAGAAGAACTAAGTTTCACACGCAGAGTGGATGAATCTTTAAATGCTAGTTCCTTTTCACCTGAGAACATTTTGGAATACTTGAAAACTCTATCCGAGTTTCCAACTGGTGGCTTTGATCGATTGGAGCTTTTAATTGCTAAGGCTCAGTTGCTTGCTTTCTATCGTTTGAAGGGTTACTCTTGCTTGCCTGAGTTGCAATATTGTGGAGTTGTGGATAATGACACTGATGCCTTCTTAATTAAGGACTTAATTAAGGGCTCTGATAAAAGTTTGAGTGAAGTTAATAAGCATGCAACTCATGCGAGTAAAAAAGGTCAAACTGGTGCTGGAAATTTGAAGACAGCAAATGGCTCCTGTCTCAAACGCAAACATAATTTGAAAGATGATTTATATCCAGAAAAGAAGAAAATAATTTTGTCAGAAGCAGCAGGTGGGACTCCAGATTCTTCACTTGGTAATTATCAGCCAGGTGATGCCACTGATAATCTGATTTCTCCTGCCTCTTCCAAGAAAAGGAAGACTATTGATCACTGTGCTGGTGTTTCAGGGATGAAAGATAGGAGAAAAACAATTTCCCTTGCCAAAGTTTCAAATACCATAAATCAATCATTTAAGATTGGTGAACGTATTCTAAGGGTTGCTAATCAACTTACTGGACCACCCTCCTCTATGTTGAAGTGTTCTGGAGACAGGACTCAAATGGAAGATGGAAGTGCTGATGGTTTTCCAGGGAATGGATCTGATGTCTTCTCCCCTAATCCTGAGAAGACTCAGAAGTCAAGCTTCACTGTTCCAACGGAATATTCATCTCTAGATGATTTGCTACATTTACTTCAGTGGGTAGCACATGAACCCCTGGGAGATTATAGTTCCCTGAATGTTATAGTGAGCTTCTTCTCTGATTTCAGGAATTCAATAATCGTGGCCAATGATTCTGGAAAAGAAAATTTTCCTACAAAGAAAGTTGGTGCTAAAAGGAATAAACGACCTGTGGGTGGATCACCTGAAACATTTGAATTTGATGATCTGAGTCATACACATTGGACTGACATGGGCATCCAGAGTGGTTCTGAAAAACAGCAGTCACAGAGAAGCAGCAGAAGAGACTATCAACATGCCCCTGCTGAGCCAGAAAAACCTTTTATAGTTTATACTCGTAGGTCCTATTCCAGGAAACAATGTTCTGACAGCAATCATGTTGCAGTTCCTGAAAAGCATTCTGGTTGTGCAGATGAGAATTCCCCAGTTGAGCTTGTTTTAAACTTTGCTGAGCTGGATTCTGTTCCCTCAGAAATGCGCCTAAATAAGATTTTTAGGCGATTTGGACCTCTAAATGAATCTGAAACAGAAGTTGATAGAGGGAGCAGCCGGGCTAGAGTGGTTTTTAAGAAGTGTGTTGATGCAGAGGTTGCTTTCAGTAGTGCTAAAAAGTTCAACATATTTGGATCAGTTCTTGTAAATTACAAGCTTAACCATACTCCAAGTACATTATCCAAAGCTTCATCTCTTGCCACAACTCAAGACCAGGAGAACGGAAATGCATCTTGA >Glyma20g34040.3 sequence type=CDS gene model=Glyma20g34040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGGGGTAAGGTGAAAAGCCATCCGTGGTGGCCAGGGCAGATATTTGATCCCTCGGATTCGTCTGTGGAGGCAAAGAAGCATTTAAAAAAGGACCGCCATTTGGTTGCGTATTTTGGGGATAGAACATTTGCTTGGAATGAGTCATCTCAGCTAAAGCTCTTTAGGACTCATTTCTCTAATGTTGTAAAGCAGAGCAATTCAGATGCATTTCAGAATGCAGTAGATTGTGCTTTGGATGAAGTCGGGAGATGTGCAGAATTTGGGTTAGCATGTTCCTGCATACCTAAAGATACTTATGACGAGATTAAGCTCCAAACTGTTCAAAACACTGGGATTCGAGAAGAACTAAGTTTCACACGCAGAGTGGATGAATCTTTAAATGCTAGTTCCTTTTCACCTGAGAACATTTTGGAATACTTGAAAACTCTATCCGAGTTTCCAACTGGTGGCTTTGATCGATTGGAGCTTTTAATTGCTAAGGCTCAGTTGCTTGCTTTCTATCGTTTGAAGGGTTACTCTTGCTTGCCTGAGTTGCAATATTGTGGAGTTGTGGATAATGACACTGATGCCTTCTTAATTAAGGACTTAATTAAGGGCTCTGATAAAAGTTTGAGTGAAGTTAATAAGCATGCAACTCATGCGAGTAAAAAAGGTCAAACTGGTGCTGGAAATTTGAAGACAGCAAATGGCTCCTGTCTCAAACGCAAACATAATTTGAAAGATGATTTATATCCAGAAAAGAAGAAAATAATTTTGTCAGAAGCAGCAGGTGGGACTCCAGATTCTTCACTTGGTAATTATCAGCCAGGGATGAAAGATAGGAGAAAAACAATTTCCCTTGCCAAAGTTTCAAATACCATAAATCAATCATTTAAGATTGGTGAACGTATTCTAAGGGTTGCTAATCAACTTACTGGACCACCCTCCTCTATGTTGAAGTGTTCTGGAGACAGGACTCAAATGGAAGATGGAAGTGCTGATGGTTTTCCAGGGAATGGATCTGATGTCTTCTCCCCTAATCCTGAGAAGACTCAGAAGTCAAGCTTCACTGTTCCAACGGAATATTCATCTCTAGATGATTTGCTACATTTACTTCAGTGGGTAGCACATGAACCCCTGGGAGATTATAGTTCCCTGAATGTTATAGTGAGCTTCTTCTCTGATTTCAGGAATTCAATAATCGTGGCCAATGATTCTGGAAAAGAAAATTTTCCTACAAAGAAAGTTGGTGCTAAAAGGAATAAACGACCTGTGGGTGGATCACCTGAAACATTTGAATTTGATGATCTGAGTCATACACATTGGACTGACATGGGCATCCAGAGTGGTTCTGAAAAACAGCAGTCACAGAGAAGCAGCAGAAGAGACTATCAACATGCCCCTGCTGAGCCAGAAAAACCTTTTATAGTTTATACTCGTAGGTCCTATTCCAGGAAACAATGTTCTGACAGCAATCATGTTGCAGTTCCTGAAAAGCATTCTGGTTGTGCAGATGAGAATTCCCCAGTTGAGCTTGTTTTAAACTTTGCTGAGCTGGATTCTGTTCCCTCAGAAATGCGCCTAAATAAGATTTTTAGGCGATTTGGACCTCTAAATGAATCTGAAACAGAAGTTGATAGAGGGAGCAGCCGGGCTAGAGTGGTTTTTAAGAAGTGTGTTGATGCAGAGGTTGCTTTCAGTAGTGCTAAAAAGTTCAACATATTTGGATCAGTTCTTGTAAATTACAAGCTTAACCATACTCCAAGTACATTATCCAAAGCTTCATCTCTTGCCACAACTCAAGACCAGGAGAACGGAAATGCATCTTGA
>Glyma20g34040.2 sequence type=predicted peptide gene model=Glyma20g34040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWGKVKSHPWWPGQIFDPSDSSVEAKKHLKKDRHLVAYFGDRTFAWNESSQLKLFRTHFSNVVKQSNSDAFQNAVDCALDEVGRCAEFGLACSCIPKDTYDEIKLQTVQNTGIREELSFTRRVDESLNASSFSPENILEYLKTLSEFPTGGFDRLELLIAKAQLLAFYRLKGYSCLPELQYCGVVDNDTDAFLIKDLIKGSDKSLSEVNKHATHASKKGQTGAGNLKTANGSCLKRKHNLKDDLYPEKKKIILSEAAGGTPDSSLGNYQPGDATDNLISPASSKKRKTIDHCAGVSGMKDRRKTISLAKVSNTINQSFKIGERILRVANQLTGPPSSMLKCSGDRTQMEDGSADGFPGNGSDVFSPNPEKTQKSSFTVPTEYSSLDDLLHLLQWVAHEPLGDYSSLNVIVSFFSDFRNSIIVANDSGKENFPTKKVGAKRNKRPVGGSPETFEFDDLSHTHWTDMGIQSGSEKQQSQRSSRRDYQHAPAEPEKPFIVYTRRSYSRKQCSDSNHVAVPEKHSGCADENSPVELVLNFAELDSVPSEMRLNKIFRRFGPLNESETEVDRGSSRARVVFKKCVDAEVAFSSAKKFNIFGSVLVNYKLNHTPSTLSKASSLATTQDQENGNAS* >Glyma20g34040.3 sequence type=predicted peptide gene model=Glyma20g34040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWGKVKSHPWWPGQIFDPSDSSVEAKKHLKKDRHLVAYFGDRTFAWNESSQLKLFRTHFSNVVKQSNSDAFQNAVDCALDEVGRCAEFGLACSCIPKDTYDEIKLQTVQNTGIREELSFTRRVDESLNASSFSPENILEYLKTLSEFPTGGFDRLELLIAKAQLLAFYRLKGYSCLPELQYCGVVDNDTDAFLIKDLIKGSDKSLSEVNKHATHASKKGQTGAGNLKTANGSCLKRKHNLKDDLYPEKKKIILSEAAGGTPDSSLGNYQPGMKDRRKTISLAKVSNTINQSFKIGERILRVANQLTGPPSSMLKCSGDRTQMEDGSADGFPGNGSDVFSPNPEKTQKSSFTVPTEYSSLDDLLHLLQWVAHEPLGDYSSLNVIVSFFSDFRNSIIVANDSGKENFPTKKVGAKRNKRPVGGSPETFEFDDLSHTHWTDMGIQSGSEKQQSQRSSRRDYQHAPAEPEKPFIVYTRRSYSRKQCSDSNHVAVPEKHSGCADENSPVELVLNFAELDSVPSEMRLNKIFRRFGPLNESETEVDRGSSRARVVFKKCVDAEVAFSSAKKFNIFGSVLVNYKLNHTPSTLSKASSLATTQDQENGNAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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