SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29460 | AT | Annotation by Michelle Graham. TAIR10: glutathione S-transferase tau 4 | chr2:12626689-12627600 REVERSE LENGTH=224 | SoyBase | E_val: 7.00E-39 | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004364 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity | SoyBase | N/A | ISS |
| KOG0406 | KOG | Glutathione S-transferase | JGI | ISS | |
| PTHR11260 | Panther | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | JGI | ISS | |
| PTHR11260:SF16 | Panther | GLUTATHIONE S-TRANSFERASE THETA | JGI | ISS | |
| PF02798 | PFAM | Glutathione S-transferase, N-terminal domain | JGI | ISS | |
| UniRef100_G7JPE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase 103-1A n=1 Tax=Medicago truncatula RepID=G7JPE9_MEDTR | SoyBase | E_val: 4.00E-79 | ISS |
| UniRef100_UPI000233DC1B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC1B related cluster n=1 Tax=unknown RepID=UPI000233DC1B | SoyBase | E_val: 2.00E-119 | ISS |
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Glyma20g33951 not represented in the dataset |
Glyma20g33951 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g197600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33951.1 sequence type=CDS gene model=Glyma20g33951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGGTGAAGCTTCATGGATTTTGGTATAATCTCTTTACTTTGAGGGTGGTATGGACCTTAAAGTTAAAGGGTATACCATATCTAAACATAGAGAAAGACCGCTACAATAAGAGTCTTCAACTTCTTGAATACAACCCAGTATACAGGAAAACTCCAGTGCTTGTCCATAATGGAAAACCCCTATGTGAGTCCATGCTTATTGTTGAATACATTGATGAGATTTGGCCACATAATTCATTGCTTCCTGCTGATACCTATGAGAGAGCTCTGGCACGGTTTTGGATTAAATATGCCGATGAAATTTTTCCTGCAGTTTCTGCATTCTTCAGTAGCAATAATGATGAAGAACGAGAAAAGAGTATAGAGAAGATATGGGAGCATCTAAGGGTTGTTGAGAATCAGTGTTTTGGTGATCAGAAGAAATTTTTTGGGGGAGACATTATTAACATTGTGGAGATAGATTTTGGGTCCATATTCAAATTTCTTGTTGCAGAAGATATTTTGAAGCGAAGGTCCTGGAAGATGAGAAATTCCCTCACTTGCACTCATGGTATAATAATTTCAAGGATGTTTCAGTTATTAAAGAAAACCTCCCAGACCATGAGAAAATGGTGGCTTTTATTAAGTTTATTAGAGAAAAACGTTTGGCATCTTCCTAAGAAAGTAATCTATATAAGATCAAGTATGAATGAATCACTTTGTATCTGTCTGAATCGCTTTTTTATGCGTGTTTGCTGA
>Glyma20g33951.1 sequence type=predicted peptide gene model=Glyma20g33951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEVKLHGFWYNLFTLRVVWTLKLKGIPYLNIEKDRYNKSLQLLEYNPVYRKTPVLVHNGKPLCESMLIVEYIDEIWPHNSLLPADTYERALARFWIKYADEIFPAVSAFFSSNNDEEREKSIEKIWEHLRVVENQCFGDQKKFFGGDIINIVEIDFGSIFKFLVAEDILKRRSWKMRNSLTCTHGIIISRMFQLLKKTSQTMRKWWLLLSLLEKNVWHLPKKVIYIRSSMNESLCICLNRFFMRVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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