Glyma20g33870 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g33870

Feature Type:	gene_model
Chromosome:	Gm20
Start:	42342156
stop:	42343434
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g33870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07475	AT	Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein \| chr5:2364827-2365536 REVERSE LENGTH=192	SoyBase	E_val: 3.00E-46	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02298	PFAM	Plastocyanin-like domain	JGI		ISS
UniRef100_G7I2Z3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Blue copper protein n=1 Tax=Medicago truncatula RepID=G7I2Z3_MEDTR	SoyBase	E_val: 2.00E-84	ISS
UniRef100_UPI000233DB42	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DB42 related cluster n=1 Tax=unknown RepID=UPI000233DB42	SoyBase	E_val: 7.00E-134	ISS

Expression Patterns of Glyma20g33870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g33870

Paralog	Evidence	Comments
Glyma10g33720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g33870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g196800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g33870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g33870

Limit To All Plant Sequences

>Glyma20g33870.1   sequence type=CDS   gene model=Glyma20g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGTACTCTTGGTTTATTCTCTTCTCTTTTCTTTCGCAATTATGACATGCTCAGCCACTACTTACACTGTTGGAGATAGCTCTGGCTGGGACATTAGCACAAATCTTGATACATGGATTGCAGATAAAAATTTCAAAGTAGGGGATGCTCTTGTTTTCCAATATTCATCAAGCCAAAGTGTGGAAGAGGTTACAAAAGAAAACTTTGACACATGCAACACCACCAATGTTTTAGCAACTTATGGGAGTGGGAACACAACAGTGCCATTGACAAGAGCTGGGGGCAGGTATTATGTATCTGGAAACAAATTGTATTGCCTTGGAGGGATGAAGCTTCATGTTCACGTAGAAGGCGATGACAAATCACTAGCACCAACTATAGCACCTAAGGCTGTGGCTGGAACAGATCAAAACACTTCCACACTTCCGCAGTCTCCTTCTTCAAAGAAAAACACACACTTTTCGGCAGGAGCTGCGAATTGTGCAAGGGATGCAATTCAGTTAGTTTATATTGCTCTCGTGGCTGCCGTATATGGGATGATGAAGATTTGA

Predicted protein sequences of Glyma20g33870

Limit To All Plant Sequences

>Glyma20g33870.1   sequence type=predicted peptide   gene model=Glyma20g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVLLVYSLLFSFAIMTCSATTYTVGDSSGWDISTNLDTWIADKNFKVGDALVFQYSSSQSVEEVTKENFDTCNTTNVLATYGSGNTTVPLTRAGGRYYVSGNKLYCLGGMKLHVHVEGDDKSLAPTIAPKAVAGTDQNTSTLPQSPSSKKNTHFSAGAANCARDAIQLVYIALVAAVYGMMKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain