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Report for Sequence Feature Glyma20g33850

Feature Type:gene_model
Chromosome:Gm20
Start:42326422
stop:42327389
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25140AT Annotation by Michelle Graham. TAIR10: oleosin 1 | chr4:12900498-12901259 FORWARD LENGTH=173 SoyBaseE_val: 1.00E-42ISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010344GO-bp Annotation by Michelle Graham. GO Biological Process: seed oilbody biogenesis SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01277PFAM Oleosin JGI ISS
UniRef100_I1NHV9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHV9_SOYBN SoyBaseE_val: 2.00E-99ISS
UniRef100_Q45W87UniRef Annotation by Michelle Graham. Most informative UniRef hit: Oleosin 1 n=1 Tax=Arachis hypogaea RepID=Q45W87_ARAHY SoyBaseE_val: 6.00E-62ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g33850 not represented in the dataset

Glyma20g33850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g33760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g196600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g33850.2   sequence type=CDS   gene model=Glyma20g33850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCTTGCCAACACGTGCCAAACCACCTCCTCAGGTGTTGCCACCCAAGCCTCCACTCACCAATTTCTCCATTTATACCCTCATTACCACCACCTTAAACCCTACCACATTAATTACTCACTCTTCACTCAAAACTCTTGTCTTTCATTTTGATAATTCCCACACTATGGCTGAGCTTCACTACCAACAACAACACCAATACCCTCACCGATACCCTAATGATCCATACGAACAACAAACTAGCTACTCCACTCAGGTCGTCAAGGCGGCCACCGCCGTCACCGCGGGCGGCTCCCTCTTGATCCTCGCCTCGTTGATCCTTGCCGGCACCATCATCGCCCTCACCATCGTCACACCACCGCTCGTCATCTTCAGTCCGGTTCTCGTCCCCGCGGTGATCACCGTCGCGCTGCTGAGCCTGGGGTTCCTTGCCTCCGGCGGGTTCGGTGTGGCGGCGATCACGGTGCTGGCGTGGATCTACAGGTACGTCACCGGGAAGTACCCACCTGGCGCGGATCAGTTGGACAGCGCGCCTCACAAGATCATGGACAAGGCGCGTGAGATCAAGGACTATGGACAGCAGCAAATCAGTGGGGTGCAGGCTTCTTAA

>Glyma20g33850.2   sequence type=predicted peptide   gene model=Glyma20g33850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLPTRAKPPPQVLPPKPPLTNFSIYTLITTTLNPTTLITHSSLKTLVFHFDNSHTMAELHYQQQHQYPHRYPNDPYEQQTSYSTQVVKAATAVTAGGSLLILASLILAGTIIALTIVTPPLVIFSPVLVPAVITVALLSLGFLASGGFGVAAITVLAWIYRYVTGKYPPGADQLDSAPHKIMDKAREIKDYGQQQISGVQAS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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