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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10650 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309 | SoyBase | E_val: 4.00E-98 | ISS |
| GO:0006997 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleus organization | SoyBase | N/A | ISS |
| GO:0016973 | GO-bp | Annotation by Michelle Graham. GO Biological Process: poly(A)+ mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0034399 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear periphery | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_Q9LPN4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F18K10.27 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPN4_ARATH | SoyBase | E_val: 5.00E-85 | ISS |
| UniRef100_UPI000233DC16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC16 related cluster n=1 Tax=unknown RepID=UPI000233DC16 | SoyBase | E_val: 0 | ISS |
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Glyma20g33720 not represented in the dataset |
Glyma20g33720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g195200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33720.1 sequence type=CDS gene model=Glyma20g33720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGGAAGAGAAAGAGAAGGGATACGAAGGGGGAGCAGGAGGGAAGTTTCGGAAACGCCCCTTCCGCAGCAGGTCCCAAACGACGCCGTACGACCGCCCCCCAACGTCACTGAGAAACCCTAACTGGAAGAACAACGGTTGGTTGTCGAAGCTGGTGGATCCCGCTCAGAGGCTCATCACTTACAGCGCTCACTCTCTCTTCTCCTCGCTCTTCCGCAAGCGCCTTCCACCACCTTCTTCAGAAACGGAACGGGAAGCGAGGAACAATCATCCTCAGGAAGATGCCACCTTTGTTACAAACAATTCCTCTGGCACGCAGCAAGGACCTGTTGGAGGAAGTGATGCTCAAATTAATTGTTCTGACGGGGGTGGATTAACTGAACTTGAGAAACTATTAAAGCAGAAGACTTTCACCAGATCTGAGATTGATCATTTGACAGCACTTATGCGTTCAAGAACTGTCAATGCACCTGTCAGGGAAGAGGAGAAGGGGACAGAAATGGTCCCCTCAGAACCAATGTTGCTGAGTGGACAAAAGGAATATCCCAAAACACCTGCACTAGAAAATGGGACTAAAAATGGTCTTGTTGTAACCCCACATGTTGCTTCAAGTTTTCCTGTTGAGGATGTTGCTTCACCTGCAGAGCTTGCAAAGTCTTACATGGGGAGCAGGCCTACCAAGGTATCCTCTTCAATTTTAGGCATGCAAACTCTTGCACTCAGGGAGGATCCAACTCTTGTAAACAGTGAAAACGTTGCTCTGAAATCCCCTATTATGTCCATTGTGCCAAGGGCTACTAGACATGCTGCAGTTCATGAAAATGGTTTTGTGACCGCAAGATCTCGTGGCAGATCTGTGATATATAATATGGCTCGAACACCGTATGCCAGAATTTATCCAACATCCACTCTCAAGGGTGGGGGGCGTGCTGTTGAAGGTGAGCCATCGTCTTCAAGTCAGTTTGCATTGGATCATGATGTGCATTCTGGATCTAAACTAGGGTCTGTAAAACATAGAAGTTCAGTATTGGATAATGATATAGGATCTGTTGGTCCTGTACGGCGAATTCGTCAGAAGTCTAATCTTCTATATTCTATAGGCTCATGCTCACCTATTTCTGGTAGCTCTTCATCTGTTGCTAGGGGCGGAATGGTTAAGGATGCTGCTCAGCAACCCTTGTCTTCCATGCAGAAGCCTGCAAAAGAAAATGTGGATGACATTATACCTAGTTCGAGCTTCCCCTCTTTACCCTCAAAATCCAGTGAAGTGGCTTCAAAAATACTGCATCAACTTGATAAGTTGGTTTCTCCAAAAGAAAAATCATCTGAATTAAGGCTACCAATTGTGAATGATAATTCACCAACAAAGTTGTCGCCTTCCATGTTACGTGGACAGGCTCTTAGAAGCATGGAAATGGTGGATTCATCAAAATTGCTGGACAGTGTACATGGTAATAAAATAGATGGCCCATTTGGAAATTTGTCAACTAGTGCTCAGAATCAGAAGTCAAATTCTCAGAGAGATAAGATTGAAAATGGTCCATTGAAGCTTGTTGCTCCTTCTGCTGGATTGCTTCCACTTGTGACAGCTGCAGATGCTACAAAGCCAAGGAATCAAGTCTTATCTAGTGCAAAATCTGGGGATTCTTTTATGATAAAATCTGTTTCTGGCCCTCCACAAAAGAAGAGGGCATTCCATATGAGTGCACACGAGGATTGTCTGGATCTGGATGATGATGCTTATCCAAATGGAGCTGTCGCTTCTTTTTCTCCTGTTCAGAAAGAAATGACAAACTCCACTGCTGTGATGGAGAAAACTACTTCTGGTACTGAAGCAATTGCAGAGGAGAATCCATCAGCATTATCTGTAACAATGCCACCTAAAAGTTCTACAATAGATGGTGAGGCTCATGTTGGGACTGCCGATGAGTCTAGGGTTGGTGAGAAAGTTGATGCATATATCTCTACGACATCATCTATCCTTGATCCAATCTTCAAGCCATTTACATCAGCTACACAAACAAGTTTTGGTTTTATCAAGCCTGCTTCACCAAATGGATCAATTGTTAAACCTTCCTTTACTTTTGGGAATAAAGTGGTTTCGTCGACGGAGTTTATGGCTCCTGGTGCTCCATCAATGGAGATAACCAAATCTGGTCCAATATTTGGATTGGAAAAAGTTGTTTCATTAAGGGAGCCTGTTGCTGATGGTCCATTGGTTGACTTTGGCTCCAATAAAAATGTTAACAAGGTTCCATCAATGCCATTTACTGCTGCATCATCAGTTGGTGGTGAATCCCCTTTTCTAAAATTTGGTGTTTCTTCTGACTCAAATCTGGGAAGTTCAATTGGCTCTACTATTGTTACTGGTGTGACTGATTCTATGCCAAAAGTTCGTGAATCTGATAATGGCAATACTGAGACTAATAAAGATACTGGATCTTCTGTTAGGGCATCAGAACTAGCTATTTCATCTGCTCCATCAACATTGTTGGCATCATCCAAGAGTTTATCCAATTTTGGCCACAATTCAAATCAAAATAACGGGTCTCTTTTTTCAAGCCCTTCATTTTCTTCTTTTCCACCTCCTGTATCAAATATACTCAGTAGTTCATCATCTGCTGCCCCAAGCAGTGGCGTTAGTGCCGCTGGAAATTCTACTAGCATGGGAGCTATCACACCTGCCACAATTGCATCAAGTAATAGCAGTTCCTCCACAGTGGTGGCATCCTCATCTTCAGCAACTTCCTTTTTCAAATTTGGATCCTCTCCTGTCCGATCAGTAGGTTTACCTGTGTCATCTTCTGGTGGTTCAGAACCACCAGAAATTAAAAGCAGGCAGGATGCAGGAACCGGTGGTCTTAGCAGCACTGCCTTTGGTAGCTCATCTGCAGGGAGTGGTATTTTTGGCTTCAGCTCTTCAGCAATGACAACTGTAAATAGCAGCCAGTCTCAGAGTTCTGCCGTTGGTGCTAGCAGTGGTTCTGTGCTTGGTGCCCAGGCTTCATTTACCAGTGGGTTTGCAACTTCTACTCAGACCCAGTCTGTTTCATTTGGTTCATCTGCATCTTCCTCATCTTTTGGATTGTCCGGGAACACACCTTTTTCAAGCAGTTCTTCATTTCCTTCGTCCAGCCCTGCAGCAAGTGCAGCTTTTCTTTCTGGGAATTCGTTGTTTCCTTCTTCAAGTCCTGCCACATCTTTTGGACTTGGCACCTCTGCTTCCTCTTTGGCTGTCAACTCTGTTAGCTCCAATAGTGGTCCAAGTTCTACTTTATTTGGATCTAGTTGGCAGCCCAGCAAGTCTCCATTTGGTTCCACATTTAGTACATCATTGTCATCTGGGTTTTTGTTCGGAACATCCACTGCTTCTGTTACTTCTGCCAGTTCACCCTCAATGTTTTTATCAACCTCCAGTGCATCAATTCCTCAATTCTCATTCACTCCGGCAGCAGCAGCCTCTACCTCCACACAACCTGCTTTTGTAAGTCCTAATCCTGCCTTCACATTCGGTTCAGCTACTGTTAATAATGGTCAGATGAGTATGGAGGACAGTATGGCTGAGGATACAGGTCAAGCAACTCCACCTGCGACTTCTGTATATAGTCAGCAACCTGCCCCAGTTCAATCAAATTTTGTATTTGGAGCATCAACTCCATCAGGAGGCAGTCCTTTCCAGTTTGGTAGTCAACAGAATATTGCTCCACAGAACCCTTCTCCTTTTCAGGCTTCTGGCAGTCTAGGAGGGAGTTTCTCATTGGGCACAGGTGGAGGTGACAAATCTGCTAGAAGAATTGTGAAAGTTAAACATAAACCACGCAAGAAGTAG
>Glyma20g33720.1 sequence type=predicted peptide gene model=Glyma20g33720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEEKEKGYEGGAGGKFRKRPFRSRSQTTPYDRPPTSLRNPNWKNNGWLSKLVDPAQRLITYSAHSLFSSLFRKRLPPPSSETEREARNNHPQEDATFVTNNSSGTQQGPVGGSDAQINCSDGGGLTELEKLLKQKTFTRSEIDHLTALMRSRTVNAPVREEEKGTEMVPSEPMLLSGQKEYPKTPALENGTKNGLVVTPHVASSFPVEDVASPAELAKSYMGSRPTKVSSSILGMQTLALREDPTLVNSENVALKSPIMSIVPRATRHAAVHENGFVTARSRGRSVIYNMARTPYARIYPTSTLKGGGRAVEGEPSSSSQFALDHDVHSGSKLGSVKHRSSVLDNDIGSVGPVRRIRQKSNLLYSIGSCSPISGSSSSVARGGMVKDAAQQPLSSMQKPAKENVDDIIPSSSFPSLPSKSSEVASKILHQLDKLVSPKEKSSELRLPIVNDNSPTKLSPSMLRGQALRSMEMVDSSKLLDSVHGNKIDGPFGNLSTSAQNQKSNSQRDKIENGPLKLVAPSAGLLPLVTAADATKPRNQVLSSAKSGDSFMIKSVSGPPQKKRAFHMSAHEDCLDLDDDAYPNGAVASFSPVQKEMTNSTAVMEKTTSGTEAIAEENPSALSVTMPPKSSTIDGEAHVGTADESRVGEKVDAYISTTSSILDPIFKPFTSATQTSFGFIKPASPNGSIVKPSFTFGNKVVSSTEFMAPGAPSMEITKSGPIFGLEKVVSLREPVADGPLVDFGSNKNVNKVPSMPFTAASSVGGESPFLKFGVSSDSNLGSSIGSTIVTGVTDSMPKVRESDNGNTETNKDTGSSVRASELAISSAPSTLLASSKSLSNFGHNSNQNNGSLFSSPSFSSFPPPVSNILSSSSSAAPSSGVSAAGNSTSMGAITPATIASSNSSSSTVVASSSSATSFFKFGSSPVRSVGLPVSSSGGSEPPEIKSRQDAGTGGLSSTAFGSSSAGSGIFGFSSSAMTTVNSSQSQSSAVGASSGSVLGAQASFTSGFATSTQTQSVSFGSSASSSSFGLSGNTPFSSSSSFPSSSPAASAAFLSGNSLFPSSSPATSFGLGTSASSLAVNSVSSNSGPSSTLFGSSWQPSKSPFGSTFSTSLSSGFLFGTSTASVTSASSPSMFLSTSSASIPQFSFTPAAAASTSTQPAFVSPNPAFTFGSATVNNGQMSMEDSMAEDTGQATPPATSVYSQQPAPVQSNFVFGASTPSGGSPFQFGSQQNIAPQNPSPFQASGSLGGSFSLGTGGGDKSARRIVKVKHKPRKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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